LOCUS       NM_026498               1043 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus mitochondrial ribosomal protein S11 (Mrps11),
            transcript variant 1, mRNA.
ACCESSION   NM_026498
VERSION     NM_026498.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1043)
  AUTHORS   Cheong,A., Lingutla,R. and Mager,J.
  TITLE     Expression analysis of mammalian mitochondrial ribosomal protein
            genes
  JOURNAL   Gene Expr Patterns 38, 119147 (2020)
   PUBMED   32987154
REFERENCE   2  (bases 1 to 1043)
  AUTHORS   Greber,B.J. and Ban,N.
  TITLE     Structure and Function of the Mitochondrial Ribosome
  JOURNAL   Annu Rev Biochem 85, 103-132 (2016)
   PUBMED   27023846
  REMARK    Review article
REFERENCE   3  (bases 1 to 1043)
  AUTHORS   Amunts,A., Brown,A., Toots,J., Scheres,S.H.W. and Ramakrishnan,V.
  TITLE     Ribosome. The structure of the human mitochondrial ribosome
  JOURNAL   Science 348 (6230), 95-98 (2015)
   PUBMED   25838379
REFERENCE   4  (bases 1 to 1043)
  AUTHORS   Srivastava,U., Paigen,B.J. and Korstanje,R.
  TITLE     Differences in health status affect susceptibility and mapping of
            genetic loci for atherosclerosis (fatty streak) in inbred mice
  JOURNAL   Arterioscler Thromb Vasc Biol 32 (10), 2380-2386 (2012)
   PUBMED   22837474
REFERENCE   5  (bases 1 to 1043)
  AUTHORS   Camara,Y., Asin-Cayuela,J., Park,C.B., Metodiev,M.D., Shi,Y.,
            Ruzzenente,B., Kukat,C., Habermann,B., Wibom,R., Hultenby,K.,
            Franz,T., Erdjument-Bromage,H., Tempst,P., Hallberg,B.M.,
            Gustafsson,C.M. and Larsson,N.G.
  TITLE     MTERF4 regulates translation by targeting the methyltransferase
            NSUN4 to the mammalian mitochondrial ribosome
  JOURNAL   Cell Metab 13 (5), 527-539 (2011)
   PUBMED   21531335
REFERENCE   6  (bases 1 to 1043)
  AUTHORS   Mootha,V.K., Bunkenborg,J., Olsen,J.V., Hjerrild,M.,
            Wisniewski,J.R., Stahl,E., Bolouri,M.S., Ray,H.N., Sihag,S.,
            Kamal,M., Patterson,N., Lander,E.S. and Mann,M.
  TITLE     Integrated analysis of protein composition, tissue diversity, and
            gene regulation in mouse mitochondria
  JOURNAL   Cell 115 (5), 629-640 (2003)
   PUBMED   14651853
REFERENCE   7  (bases 1 to 1043)
  AUTHORS   Suzuki,T., Terasaki,M., Takemoto-Hori,C., Hanada,T., Ueda,T.,
            Wada,A. and Watanabe,K.
  TITLE     Proteomic analysis of the mammalian mitochondrial ribosome.
            Identification of protein components in the 28 S small subunit
  JOURNAL   J Biol Chem 276 (35), 33181-33195 (2001)
   PUBMED   11402041
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BB840699.1 and AK152027.1.
            
            On Mar 21, 2008 this sequence version replaced NM_026498.1.
            
            Transcript Variant: This variant (1) encodes the longer isoform
            (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK002993.1, DV056267.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: reported by MitoCarta
            RefSeq Select criteria             :: based on conservation,
                                                  expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-210               BB840699.1         14-223
            211-1043            AK152027.1         2-834
FEATURES             Location/Qualifiers
     source          1..1043
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 44.8 cM"
     gene            1..1043
                     /gene="Mrps11"
                     /gene_synonym="0710005I03Rik; MRP-S11; S11mt"
                     /note="mitochondrial ribosomal protein S11"
                     /db_xref="GeneID:67994"
                     /db_xref="MGI:MGI:1915244"
     exon            1..293
                     /gene="Mrps11"
                     /gene_synonym="0710005I03Rik; MRP-S11; S11mt"
                     /inference="alignment:Splign:2.1.0"
     CDS             229..804
                     /gene="Mrps11"
                     /gene_synonym="0710005I03Rik; MRP-S11; S11mt"
                     /note="isoform 1 is encoded by transcript variant 1; 28S
                     ribosomal protein S11, mitochondrial; small ribosomal
                     subunit protein uS11m"
                     /codon_start=1
                     /product="small ribosomal subunit protein uS11m isoform 1"
                     /protein_id="NP_080774.2"
                     /db_xref="CCDS:CCDS21374.1"
                     /db_xref="GeneID:67994"
                     /db_xref="MGI:MGI:1915244"
                     /translation="MQVLRNSGSWLLRSWAGHGMTRFVGIAPAKNIHTGAPRLEDSAA
                     RQNTEREAAPSRFSLYPPVPGQESSLQWAGMKFEDVPIAHIKATYNNTQIQVVSATNA
                     SLARASCGTEGFRNAKKGTGIAAQTAGIAAAAKATGKGVTHIRVVVKGMGPGRWSAIK
                     GLTMGGLEVISITDNTPVPHNGCRPRKARRL"
     exon            294..401
                     /gene="Mrps11"
                     /gene_synonym="0710005I03Rik; MRP-S11; S11mt"
                     /inference="alignment:Splign:2.1.0"
     exon            402..500
                     /gene="Mrps11"
                     /gene_synonym="0710005I03Rik; MRP-S11; S11mt"
                     /inference="alignment:Splign:2.1.0"
     exon            501..630
                     /gene="Mrps11"
                     /gene_synonym="0710005I03Rik; MRP-S11; S11mt"
                     /inference="alignment:Splign:2.1.0"
     exon            631..696
                     /gene="Mrps11"
                     /gene_synonym="0710005I03Rik; MRP-S11; S11mt"
                     /inference="alignment:Splign:2.1.0"
     exon            697..1043
                     /gene="Mrps11"
                     /gene_synonym="0710005I03Rik; MRP-S11; S11mt"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1024..1029
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Mrps11"
                     /gene_synonym="0710005I03Rik; MRP-S11; S11mt"
                     /note="putative"
     polyA_site      1043
                     /gene="Mrps11"
                     /gene_synonym="0710005I03Rik; MRP-S11; S11mt"
                     /note="putative"
ORIGIN      
        1 tggaatgaac cattcccttt gggggaggta ggtgaaattc tagtgttaga ccactagaaa
       61 ggggaaagtt cctacataaa tggttttata gagctttaaa tttgaagaaa aaatacttac
      121 aggactattt aagagcaatc aggtgatttc ctgtctgtga gcacccccac agaggctcat
      181 ggtgctggct cgagctaagc caagcgccgc ggagggtcaa tttcagtcat gcaggtttta
      241 agaaactccg ggtcgtggct cctgcggtcc tgggctggac atggaatgac caggtttgtg
      301 ggcattgccc cagctaagaa tatccacacc ggagccccga gattagaaga ctcagctgcc
      361 aggcagaaca ctgaaaggga agcggctcca agtcgcttca gcctttaccc tccggttcca
      421 ggacaggaga gctctctgca gtgggcaggg atgaagtttg aggacgtccc aattgcacac
      481 attaaagcaa cctacaacaa cacacagatc caggtagtct ctgccaccaa tgcgtccctg
      541 gcccgcgcct cctgtggcac agaaggcttt cgcaatgcca agaagggcac cggcatcgcc
      601 gcacagacag caggcatagc tgccgcagca aaagccacag gaaagggagt gacccacatc
      661 agagtcgtag tgaaaggcat ggggccagga cgctggtctg ccatcaaagg actgaccatg
      721 gggggtctgg aagtgatctc aatcacagac aacaccccgg tcccacacaa tggctgccga
      781 ccccggaagg ctcgaaggct gtgacgggaa gggagcctgc acttggacct ggcctcaggt
      841 cttgactcct gtggatccta cagaaggccc actgtggaag ccgctggagc cggctgttct
      901 cgagccctcc ttggggaaac actcctctcc tcgcaccgag gctggaagtg ccaagctggc
      961 ctcttggaca tgagggagtg ggaaccccag gcccactgtg gccagctcag cctctgctcc
     1021 aaaaataaaa aactattctc tgt
//
