LOCUS       NM_030116               1429 bp    mRNA    linear   ROD 14-JUN-2024
DEFINITION  Mus musculus mitochondrial ribosomal protein L9 (Mrpl9), transcript
            variant 1, mRNA.
ACCESSION   NM_030116
VERSION     NM_030116.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1429)
  AUTHORS   Cheong,A., Lingutla,R. and Mager,J.
  TITLE     Expression analysis of mammalian mitochondrial ribosomal protein
            genes
  JOURNAL   Gene Expr Patterns 38, 119147 (2020)
   PUBMED   32987154
REFERENCE   2  (bases 1 to 1429)
  AUTHORS   Greber,B.J. and Ban,N.
  TITLE     Structure and Function of the Mitochondrial Ribosome
  JOURNAL   Annu Rev Biochem 85, 103-132 (2016)
   PUBMED   27023846
  REMARK    Review article
REFERENCE   3  (bases 1 to 1429)
  AUTHORS   Brown,A., Amunts,A., Bai,X.C., Sugimoto,Y., Edwards,P.C.,
            Murshudov,G., Scheres,S.H.W. and Ramakrishnan,V.
  TITLE     Structure of the large ribosomal subunit from human mitochondria
  JOURNAL   Science 346 (6210), 718-722 (2014)
   PUBMED   25278503
REFERENCE   4  (bases 1 to 1429)
  AUTHORS   Mootha,V.K., Bunkenborg,J., Olsen,J.V., Hjerrild,M.,
            Wisniewski,J.R., Stahl,E., Bolouri,M.S., Ray,H.N., Sihag,S.,
            Kamal,M., Patterson,N., Lander,E.S. and Mann,M.
  TITLE     Integrated analysis of protein composition, tissue diversity, and
            gene regulation in mouse mitochondria
  JOURNAL   Cell 115 (5), 629-640 (2003)
   PUBMED   14651853
REFERENCE   5  (bases 1 to 1429)
  AUTHORS   Suzuki,T., Terasaki,M., Takemoto-Hori,C., Hanada,T., Ueda,T.,
            Wada,A. and Watanabe,K.
  TITLE     Structural compensation for the deficit of rRNA with proteins in
            the mammalian mitochondrial ribosome. Systematic analysis of
            protein components of the large ribosomal subunit from mammalian
            mitochondria
  JOURNAL   J Biol Chem 276 (24), 21724-21736 (2001)
   PUBMED   11279069
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC122808.3.
            
            On Mar 29, 2023 this sequence version replaced NM_030116.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK162023.1, AK046099.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: reported by MitoCarta
            RefSeq Select criteria             :: based on conservation,
                                                  expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-171               AC122808.3         93159-93329         c
            172-328             AC122808.3         92838-92994         c
            329-453             AC122808.3         91942-92066         c
            454-504             AC122808.3         91702-91752         c
            505-606             AC122808.3         89916-90017         c
            607-690             AC122808.3         89310-89393         c
            691-1429            AC122808.3         88129-88867         c
FEATURES             Location/Qualifiers
     source          1..1429
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 40.68 cM"
     gene            1..1429
                     /gene="Mrpl9"
                     /gene_synonym="8030480E20Rik; C330013D18Rik; L9mt"
                     /note="mitochondrial ribosomal protein L9"
                     /db_xref="GeneID:78523"
                     /db_xref="MGI:MGI:2137211"
     exon            1..171
                     /gene="Mrpl9"
                     /gene_synonym="8030480E20Rik; C330013D18Rik; L9mt"
                     /inference="alignment:Splign:2.1.0"
     CDS             28..825
                     /gene="Mrpl9"
                     /gene_synonym="8030480E20Rik; C330013D18Rik; L9mt"
                     /note="isoform 1 is encoded by transcript variant 1; 39S
                     ribosomal protein L9, mitochondrial; MRP-L9; large
                     ribosomal subunit protein bL9m"
                     /codon_start=1
                     /product="large ribosomal subunit protein bL9m isoform 1"
                     /protein_id="NP_084392.1"
                     /db_xref="CCDS:CCDS17593.1"
                     /db_xref="GeneID:78523"
                     /db_xref="MGI:MGI:2137211"
                     /translation="MAASVAPGVRTLWWAGAAWLRQGGIRELFRPRIEGSTPGRDFSL
                     SHYQSTVIVERWWKVPLAGEGRKPHLHRRHRVYKLVEDTKHRPKDNLELILTQSVDEI
                     GVRGDLVSVKKSVGRNKLLSQGLAVYASPENRKLFEEEKSLRREGKLEKIQTKAGEAT
                     VKFLRSCHLEVGMKNNVKWELNPEIVARHFFKNLGVVVAPHALRLPEEPITRWGEYWC
                     DVTVNGLDTVRVPMSVVLFQKPKTKRYKHWLAQQAAKSVAPTNPQAV"
     exon            172..328
                     /gene="Mrpl9"
                     /gene_synonym="8030480E20Rik; C330013D18Rik; L9mt"
                     /inference="alignment:Splign:2.1.0"
     exon            329..453
                     /gene="Mrpl9"
                     /gene_synonym="8030480E20Rik; C330013D18Rik; L9mt"
                     /inference="alignment:Splign:2.1.0"
     exon            454..504
                     /gene="Mrpl9"
                     /gene_synonym="8030480E20Rik; C330013D18Rik; L9mt"
                     /inference="alignment:Splign:2.1.0"
     exon            505..606
                     /gene="Mrpl9"
                     /gene_synonym="8030480E20Rik; C330013D18Rik; L9mt"
                     /inference="alignment:Splign:2.1.0"
     exon            607..690
                     /gene="Mrpl9"
                     /gene_synonym="8030480E20Rik; C330013D18Rik; L9mt"
                     /inference="alignment:Splign:2.1.0"
     exon            691..1429
                     /gene="Mrpl9"
                     /gene_synonym="8030480E20Rik; C330013D18Rik; L9mt"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1406..1411
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Mrpl9"
                     /gene_synonym="8030480E20Rik; C330013D18Rik; L9mt"
                     /note="hexamer: ATTAAA"
     polyA_site      1417
                     /gene="Mrpl9"
                     /gene_synonym="8030480E20Rik; C330013D18Rik; L9mt"
                     /note="major polyA site"
     polyA_site      1429
                     /gene="Mrpl9"
                     /gene_synonym="8030480E20Rik; C330013D18Rik; L9mt"
                     /note="major polyA site"
ORIGIN      
        1 cttcttccgc ctgtccgctc cgctgtcatg gcggcctctg tggctcccgg ggttaggact
       61 ctgtggtggg caggtgctgc ttggctgcgt caaggaggca tccgggagct attccggccg
      121 cgaattgaag ggagtacccc ggggcgtgac ttcagtctct ctcattatca gagcacggtc
      181 atcgtggagc gctggtggaa ggtgccgctc gccggggagg gccgaaagcc gcacctgcac
      241 cggcgtcacc gcgtgtataa gttggtggag gacacgaaac accggcccaa agacaacttg
      301 gagctcatcc tcacgcagtc tgtggacgaa attggagtcc ggggtgatct ggtctcagtg
      361 aagaaatctg tgggtcgtaa caagctcctt tctcagggac tggcagtgta tgcttctcct
      421 gaaaatagga agctgtttga agaggagaaa tcgctgagac gcgaaggaaa actggagaag
      481 atccagacaa aggcaggaga ggcgacagtg aagtttctga gaagctgtca tctagaggtg
      541 ggaatgaaga acaatgtcaa atgggaacta aaccctgaaa tagttgcccg ccatttcttc
      601 aagaatcttg gtgtggtggt tgccccacat gctctgaggc tgccagagga gcctatcact
      661 cggtggggcg agtactggtg tgatgtgact gtaaatggac tcgacactgt gagagttcct
      721 atgtccgtag tgctctttca gaagcccaag acgaaaagat acaagcactg gttagcccag
      781 caagctgcca agagcgtggc ccccaccaac ccccaggctg tctgagtcaa aagagccgtg
      841 gagcagcctg gccagcactt ggagctaccc cagctctgag cagatgtgga tcattgagaa
      901 catgtggact cagcagactg agctgcacat acggggcagg ttcgctgtgg ttgtcatctc
      961 cttcagtggt catcgtagcc agctgtgttg cctcgctctg caggcagtag atgtaataag
     1021 ctgaatatca gtggccaaaa cagtcttctt agccgttcca tctttgggag agttggtggg
     1081 aacaggtgca ggggcctagc cactattctg acagttgttt tattctcagc cagactgtgt
     1141 cttgtgcaga aatgaagagc tgcttaactg ggcttcagtt gacggggcag gatatccaag
     1201 taaggtgtct tgagccatgg agggctgtac aaaggaggaa aatatagcca ttctctgtgt
     1261 cctacagctg ccatgagcag actgctctga acatagccaa ttacatctgc tcttagagct
     1321 ttctctctcc atgtggttga tagagtggat tccactaaga tctgtataag gcctaaggat
     1381 gattgacaga gaaagtgaag ctgggattaa agatgcttaa aaagaaaaa
//
