LOCUS       NM_001302336             950 bp    mRNA    linear   ROD 06-JUN-2024
DEFINITION  Mus musculus mitochondrial ribosomal protein L55 (Mrpl55),
            transcript variant 3, mRNA.
ACCESSION   NM_001302336 XM_006533977
VERSION     NM_001302336.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 950)
  AUTHORS   Cheong,A., Lingutla,R. and Mager,J.
  TITLE     Expression analysis of mammalian mitochondrial ribosomal protein
            genes
  JOURNAL   Gene Expr Patterns 38, 119147 (2020)
   PUBMED   32987154
REFERENCE   2  (bases 1 to 950)
  AUTHORS   Greber,B.J. and Ban,N.
  TITLE     Structure and Function of the Mitochondrial Ribosome
  JOURNAL   Annu Rev Biochem 85, 103-132 (2016)
   PUBMED   27023846
  REMARK    Review article
REFERENCE   3  (bases 1 to 950)
  AUTHORS   Brown,A., Amunts,A., Bai,X.C., Sugimoto,Y., Edwards,P.C.,
            Murshudov,G., Scheres,S.H.W. and Ramakrishnan,V.
  TITLE     Structure of the large ribosomal subunit from human mitochondria
  JOURNAL   Science 346 (6210), 718-722 (2014)
   PUBMED   25278503
REFERENCE   4  (bases 1 to 950)
  AUTHORS   Distler,U., Schmeisser,M.J., Pelosi,A., Reim,D., Kuharev,J.,
            Weiczner,R., Baumgart,J., Boeckers,T.M., Nitsch,R., Vogt,J. and
            Tenzer,S.
  TITLE     In-depth protein profiling of the postsynaptic density from mouse
            hippocampus using data-independent acquisition proteomics
  JOURNAL   Proteomics 14 (21-22), 2607-2613 (2014)
   PUBMED   25211037
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY228808.1, AK012143.1, AK012885.1 and AV162288.1.
            
            On May 3, 2018 this sequence version replaced NM_001302336.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK012143.1, BI408304.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: reported by MitoCarta
            RefSeq Select criteria             :: based on conservation,
                                                  expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-6                 BY228808.1         2-7
            7-347               AK012143.1         2-342
            348-349             AK012885.1         316-317
            350-946             AK012143.1         353-949
            947-950             AV162288.1         263-266
FEATURES             Location/Qualifiers
     source          1..950
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 37.05 cM"
     gene            1..950
                     /gene="Mrpl55"
                     /gene_synonym="2810038N09Rik; L55mt; MRP-L55"
                     /note="mitochondrial ribosomal protein L55"
                     /db_xref="GeneID:67212"
                     /db_xref="MGI:MGI:1914462"
     exon            1..174
                     /gene="Mrpl55"
                     /gene_synonym="2810038N09Rik; L55mt; MRP-L55"
                     /inference="alignment:Splign:2.1.0"
     exon            175..258
                     /gene="Mrpl55"
                     /gene_synonym="2810038N09Rik; L55mt; MRP-L55"
                     /inference="alignment:Splign:2.1.0"
     CDS             236..619
                     /gene="Mrpl55"
                     /gene_synonym="2810038N09Rik; L55mt; MRP-L55"
                     /note="isoform 2 precursor is encoded by transcript
                     variant 3; 39S ribosomal protein L55, mitochondrial; large
                     ribosomal subunit protein mL55"
                     /codon_start=1
                     /product="large ribosomal subunit protein mL55 isoform 2
                     precursor"
                     /protein_id="NP_001289265.1"
                     /db_xref="CCDS:CCDS24763.1"
                     /db_xref="GeneID:67212"
                     /db_xref="MGI:MGI:1914462"
                     /translation="MPLAILLSLLRHCGVRAALPTPRHLHTSPWRADCSRASLTRLRR
                     QAYARLYPVLLVKQDGSTIHIRYREPRRMLAMPLDLDALSPEERRARFRKREAQLQQK
                     REEEPEVVDSFDTERYKQFWTKTKK"
     exon            259..460
                     /gene="Mrpl55"
                     /gene_synonym="2810038N09Rik; L55mt; MRP-L55"
                     /inference="alignment:Splign:2.1.0"
     exon            461..950
                     /gene="Mrpl55"
                     /gene_synonym="2810038N09Rik; L55mt; MRP-L55"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      700
                     /gene="Mrpl55"
                     /gene_synonym="2810038N09Rik; L55mt; MRP-L55"
                     /note="major polyA site"
     regulatory      784..789
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Mrpl55"
                     /gene_synonym="2810038N09Rik; L55mt; MRP-L55"
                     /note="hexamer: ATTAAA"
     polyA_site      812
                     /gene="Mrpl55"
                     /gene_synonym="2810038N09Rik; L55mt; MRP-L55"
     regulatory      928..933
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Mrpl55"
                     /gene_synonym="2810038N09Rik; L55mt; MRP-L55"
                     /note="hexamer: ATTAAA"
     polyA_site      949
                     /gene="Mrpl55"
                     /gene_synonym="2810038N09Rik; L55mt; MRP-L55"
ORIGIN      
        1 ggcgtcatca ccgcgcgccg cgggcgcctt caggacatct gggttatggt gaaggattat
       61 catctacagt gacgggacgg gttccctgtg tggccctgcg tggctcggcc tcagtttccc
      121 acctatcgag taaagttctg cacggcgggt ctacgaggtc tctcccacgc taagcagggc
      181 ctacgtcggg gccagtgact gtttcctcct gccatcaaag tgctaagaaa aaacaatgcc
      241 tttggccatt ctgcttagcc tgctgaggca ttgtggtgtg agagcagcct tacctacacc
      301 ccgccaccta cacacatccc cttggagagc tgactgcagc agggcttcac tcactcgact
      361 gcgccgccaa gcctatgctc gcctctaccc tgtgctcttg gtcaagcagg acggctccac
      421 tatccatatc cgataccggg agccacgacg catgctggcg atgcccctag acctggatgc
      481 cctgtctcca gaagagcgca gggcccggtt ccgaaaacgg gaggctcagc tccagcagaa
      541 gagggaagaa gagccagagg tagtggacag ttttgacact gaacgatata aacagttttg
      601 gaccaagacc aagaaataag tctgtcaggg agttccacca gggacatttt gtaaggatgg
      661 agggcatcta tctatttacc atacgttctt gaaaccataa ccacctgtca ttgtcttctt
      721 ttgcgtggaa gcccagtcct ggaactcatc atttctgaga agtatgtgcc aagtcaaagc
      781 cagattaaaa gctttgcttt agggcccatt taggtcagac ttttggggtt gactctttgt
      841 ttgggttttg attttttgag acatggtctc accctggtca gtctagaact caatatgtaa
      901 accaggcctg acctcctgag agctgggatt aaaggtatct gccatcatac
//
