LOCUS       NM_025317                587 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus mitochondrial ribosomal protein L54 (Mrpl54), mRNA.
ACCESSION   NM_025317
VERSION     NM_025317.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 587)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 587)
  AUTHORS   Reid,K., Daniels,E.G., Vasam,G., Kamble,R., Janssens,G.E., Hu,I.M.,
            Green,A.E., Houtkooper,R.H. and Menzies,K.J.
  TITLE     Reducing mitochondrial ribosomal gene expression does not alter
            metabolic health or lifespan in mice
  JOURNAL   Sci Rep 13 (1), 8391 (2023)
   PUBMED   37225705
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 587)
  AUTHORS   Chern,T., Achilleos,A., Tong,X., Hill,M.C., Saltzman,A.B.,
            Reineke,L.C., Chaudhury,A., Dasgupta,S.K., Redhead,Y., Watkins,D.,
            Neilson,J.R., Thiagarajan,P., Green,J.B.A., Malovannaya,A.,
            Martin,J.F., Rosenblatt,D.S. and Poche,R.A.
  TITLE     Mutations in Hcfc1 and Ronin result in an inborn error of cobalamin
            metabolism and ribosomopathy
  JOURNAL   Nat Commun 13 (1), 134 (2022)
   PUBMED   35013307
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 587)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 587)
  AUTHORS   Cheong,A., Lingutla,R. and Mager,J.
  TITLE     Expression analysis of mammalian mitochondrial ribosomal protein
            genes
  JOURNAL   Gene Expr Patterns 38, 119147 (2020)
   PUBMED   32987154
REFERENCE   6  (bases 1 to 587)
  AUTHORS   Hoekstra,E.J., von Oerthel,L., van der Linden,A.J.,
            Schellevis,R.D., Scheppink,G., Holstege,F.C., Groot-Koerkamp,M.J.,
            van der Heide,L.P. and Smidt,M.P.
  TITLE     Lmx1a is an activator of Rgs4 and Grb10 and is responsible for the
            correct specification of rostral and medial mdDA neurons
  JOURNAL   Eur J Neurosci 37 (1), 23-32 (2013)
   PUBMED   23106268
REFERENCE   7  (bases 1 to 587)
  AUTHORS   Tachikawa,K., Sasaki,S., Maeda,T. and Nakajima,K.
  TITLE     Identification of molecules preferentially expressed beneath the
            marginal zone in the developing cerebral cortex
  JOURNAL   Neurosci Res 60 (2), 135-146 (2008)
   PUBMED   18055048
REFERENCE   8  (bases 1 to 587)
  AUTHORS   Bomar,J.M., Benke,P.J., Slattery,E.L., Puttagunta,R., Taylor,L.P.,
            Seong,E., Nystuen,A., Chen,W., Albin,R.L., Patel,P.D.,
            Kittles,R.A., Sheffield,V.C. and Burmeister,M.
  TITLE     Mutations in a novel gene encoding a CRAL-TRIO domain cause human
            Cayman ataxia and ataxia/dystonia in the jittery mouse
  JOURNAL   Nat Genet 35 (3), 264-269 (2003)
   PUBMED   14556008
  REMARK    Erratum:[Nat Genet. 2005 May;37(5):555]
REFERENCE   9  (bases 1 to 587)
  AUTHORS   Puttagunta,R., Gordon,L.A., Meyer,G.E., Kapfhamer,D.,
            Lamerdin,J.E., Kantheti,P., Portman,K.M., Chung,W.K., Jenne,D.E.,
            Olsen,A.S. and Burmeister,M.
  TITLE     Comparative maps of human 19p13.3 and mouse chromosome 10 allow
            identification of sequences at evolutionary breakpoints
  JOURNAL   Genome Res 10 (9), 1369-1380 (2000)
   PUBMED   10984455
REFERENCE   10 (bases 1 to 587)
  AUTHORS   Nishiguchi,S., Joh,T., Horie,K., Zou,Z., Yasunaga,T. and Shimada,K.
  TITLE     A survey of genes expressed in undifferentiated mouse embryonal
            carcinoma F9 cells: characterization of low-abundance mRNAs
  JOURNAL   J Biochem 116 (1), 128-139 (1994)
   PUBMED   7798170
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AK003225.1.
            
            On Apr 6, 2007 this sequence version replaced NM_025317.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK003225.1, BY703531.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849377
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: reported by MitoCarta
            RefSeq Select criteria             :: based on single
                                                  protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-587               AK003225.1         2-588
FEATURES             Location/Qualifiers
     source          1..587
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="10"
                     /map="10 39.72 cM"
     gene            1..587
                     /gene="Mrpl54"
                     /gene_synonym="0610008M19Rik; D10Sut1e"
                     /note="mitochondrial ribosomal protein L54"
                     /db_xref="GeneID:66047"
                     /db_xref="MGI:MGI:1913297"
     exon            1..154
                     /gene="Mrpl54"
                     /gene_synonym="0610008M19Rik; D10Sut1e"
                     /inference="alignment:Splign:2.1.0"
     CDS             37..444
                     /gene="Mrpl54"
                     /gene_synonym="0610008M19Rik; D10Sut1e"
                     /note="39S ribosomal protein L54, mitochondrial; L54mt;
                     MRP-L54; large ribosomal subunit protein mL54"
                     /codon_start=1
                     /product="large ribosomal subunit protein mL54 precursor"
                     /protein_id="NP_079593.1"
                     /db_xref="CCDS:CCDS24049.1"
                     /db_xref="GeneID:66047"
                     /db_xref="MGI:MGI:1913297"
                     /translation="MAAAHLLRASRVWARWHPRALPVLRRPGGFSIREYAKKPVGKGG
                     KGGVAAEALKDPEVCTDPTQLTTHAMGVNIYKEGQDVALKADSEYPTWLFQVNLGPPK
                     KLEELEPESREYWRLLRKQNIWRHNRLSKNKKL"
     exon            155..311
                     /gene="Mrpl54"
                     /gene_synonym="0610008M19Rik; D10Sut1e"
                     /inference="alignment:Splign:2.1.0"
     exon            312..587
                     /gene="Mrpl54"
                     /gene_synonym="0610008M19Rik; D10Sut1e"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      587
                     /gene="Mrpl54"
                     /gene_synonym="0610008M19Rik; D10Sut1e"
                     /note="putative"
ORIGIN      
        1 acggaagtct gcacgtgcga gcggccggcc agcgtcatgg cggccgccca tctcctccgg
       61 gcttcccggg tgtgggcccg ctggcatccc cgggcgctcc cggtcctcag aagacctgga
      121 ggattctcta tccgggaata tgctaaaaag ccagttggca agggcggcaa gggcggcgtg
      181 gccgctgagg ccctgaagga ccccgaggtg tgcacagacc ccactcagct caccacacat
      241 gccatggggg tcaacatcta caaggaaggc caggatgtgg ccctgaaggc agactccgag
      301 taccccacat ggctgttcca ggtgaacttg ggtcccccca aaaagctaga ggaactagaa
      361 ccagagtccc gagagtactg gcgactactt cgcaaacaga atatctggcg ccacaaccgg
      421 ctgagcaaga acaagaagct gtagtgtgat gatgggcacc tgacgggaga ctgcctggaa
      481 ccctggccag ccagagcagg gagagaactg agtcctctga ccttcacctg ctcgccatgc
      541 cgtgcaggtc atgcacactc gaaataaata ccaaagggac ctacagc
//
