LOCUS       NM_024177               1411 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus mitochondrial ribosomal protein L38 (Mrpl38), mRNA.
ACCESSION   NM_024177
VERSION     NM_024177.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1411)
  AUTHORS   Cheong,A., Lingutla,R. and Mager,J.
  TITLE     Expression analysis of mammalian mitochondrial ribosomal protein
            genes
  JOURNAL   Gene Expr Patterns 38, 119147 (2020)
   PUBMED   32987154
REFERENCE   2  (bases 1 to 1411)
  AUTHORS   Greber,B.J. and Ban,N.
  TITLE     Structure and Function of the Mitochondrial Ribosome
  JOURNAL   Annu Rev Biochem 85, 103-132 (2016)
   PUBMED   27023846
  REMARK    Review article
REFERENCE   3  (bases 1 to 1411)
  AUTHORS   Brown,A., Amunts,A., Bai,X.C., Sugimoto,Y., Edwards,P.C.,
            Murshudov,G., Scheres,S.H.W. and Ramakrishnan,V.
  TITLE     Structure of the large ribosomal subunit from human mitochondria
  JOURNAL   Science 346 (6210), 718-722 (2014)
   PUBMED   25278503
REFERENCE   4  (bases 1 to 1411)
  AUTHORS   Taniwaki,T., Haruna,K., Nakamura,H., Sekimoto,T., Oike,Y.,
            Imaizumi,T., Saito,F., Muta,M., Soejima,Y., Utoh,A., Nakagata,N.,
            Araki,M., Yamamura,K. and Araki,K.
  TITLE     Characterization of an exchangeable gene trap using pU-17 carrying
            a stop codon-beta geo cassette
  JOURNAL   Dev Growth Differ 47 (3), 163-172 (2005)
   PUBMED   15840001
REFERENCE   5  (bases 1 to 1411)
  AUTHORS   Graack,H.R., Bryant,M.L. and O'Brien,T.W.
  TITLE     Identification of mammalian mitochondrial ribosomal proteins (MRPs)
            by N-terminal sequencing of purified bovine MRPs and comparison to
            data bank sequences: the large subribosomal particle
  JOURNAL   Biochemistry 38 (50), 16569-16577 (1999)
   PUBMED   10600119
REFERENCE   6  (bases 1 to 1411)
  AUTHORS   Araki,K., Imaizumi,T., Sekimoto,T., Yoshinobu,K., Yoshimuta,J.,
            Akizuki,M., Miura,K., Araki,M. and Yamamura,K.
  TITLE     Exchangeable gene trap using the Cre/mutated lox system
  JOURNAL   Cell Mol Biol (Noisy-le-grand) 45 (5), 737-750 (1999)
   PUBMED   10512203
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK159033.1, BC030739.1, AK151598.1 and AV094474.1.
            
            On Feb 3, 2007 this sequence version replaced NM_024177.2.
            
            CCDS Note: The coding region has been updated to extend the
            N-terminus to one that is more supported by available transcript
            and homology data.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK159033.1, BC030739.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: reported by MitoCarta
            RefSeq Select criteria             :: based on single
                                                  protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-73                AK159033.1         2-74
            74-655              BC030739.1         1-582
            656-1406            AK151598.1         595-1345
            1407-1407           BC030739.1         1334-1334
            1408-1411           AV094474.1         233-236
FEATURES             Location/Qualifiers
     source          1..1411
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 80.91 cM"
     gene            1..1411
                     /gene="Mrpl38"
                     /gene_synonym="1110036N21Rik; 4733401F03Rik; MRP-L3;
                     Rpml3"
                     /note="mitochondrial ribosomal protein L38"
                     /db_xref="GeneID:60441"
                     /db_xref="MGI:MGI:1926269"
     exon            1..158
                     /gene="Mrpl38"
                     /gene_synonym="1110036N21Rik; 4733401F03Rik; MRP-L3;
                     Rpml3"
                     /inference="alignment:Splign:2.1.0"
     exon            159..338
                     /gene="Mrpl38"
                     /gene_synonym="1110036N21Rik; 4733401F03Rik; MRP-L3;
                     Rpml3"
                     /inference="alignment:Splign:2.1.0"
     exon            339..473
                     /gene="Mrpl38"
                     /gene_synonym="1110036N21Rik; 4733401F03Rik; MRP-L3;
                     Rpml3"
                     /inference="alignment:Splign:2.1.0"
     exon            474..682
                     /gene="Mrpl38"
                     /gene_synonym="1110036N21Rik; 4733401F03Rik; MRP-L3;
                     Rpml3"
                     /inference="alignment:Splign:2.1.0"
     exon            683..755
                     /gene="Mrpl38"
                     /gene_synonym="1110036N21Rik; 4733401F03Rik; MRP-L3;
                     Rpml3"
                     /inference="alignment:Splign:2.1.0"
     exon            756..801
                     /gene="Mrpl38"
                     /gene_synonym="1110036N21Rik; 4733401F03Rik; MRP-L3;
                     Rpml3"
                     /inference="alignment:Splign:2.1.0"
     exon            802..960
                     /gene="Mrpl38"
                     /gene_synonym="1110036N21Rik; 4733401F03Rik; MRP-L3;
                     Rpml3"
                     /inference="alignment:Splign:2.1.0"
     exon            961..1097
                     /gene="Mrpl38"
                     /gene_synonym="1110036N21Rik; 4733401F03Rik; MRP-L3;
                     Rpml3"
                     /inference="alignment:Splign:2.1.0"
     exon            1098..1411
                     /gene="Mrpl38"
                     /gene_synonym="1110036N21Rik; 4733401F03Rik; MRP-L3;
                     Rpml3"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1387..1392
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Mrpl38"
                     /gene_synonym="1110036N21Rik; 4733401F03Rik; MRP-L3;
                     Rpml3"
                     /note="hexamer: AATAAA"
     polyA_site      1407
                     /gene="Mrpl38"
                     /gene_synonym="1110036N21Rik; 4733401F03Rik; MRP-L3;
                     Rpml3"
                     /note="major polyA site"
ORIGIN      
        1 atggaggcgg agcctcccgc cggacgcgca ggcttctctc cggccacctc tgtctgggtc
       61 ctacgggcgt ctttggcgac ctgggggaaa gatggcggcg ccctggtggc gtgcggcgtt
      121 tttcggaatt gggagatgcc ggggcttcag cacctcggcc ttcctcagcc gccggacacc
      181 cccgctcggg cccatgccca acgaggacat cgacgtgagc aacctggagc ggctggagaa
      241 gtaccggagc ttcgagcggt accgccgccg ggcggagcag gaggcgcgcg ccccgcactg
      301 gtggcggacc taccgggagc atttcgtgaa ggagacagat cccaaagaca aaattgacat
      361 tgggctaccc ccacccagag tcagtcggac ccaaaagcta ctggagcgga agcactttct
      421 gcgggaactt cgtgccaatg tggaagaaga acgggcagcc cgcctccgca cggctagcat
      481 cccactggag gcagtgcggg cagagtggga gaggacgtgt gggccctacc acaagcagcg
      541 tctggctgag tactatggcc tctaccgaga cctgttccac ggtgccactt ttgtgccctg
      601 ggtccctcta cacgtggctt acgccgtggg agaagaggac ctgatcccgg tgtatcatgg
      661 caatgaagtg actccgaccg aggcttcccg ggccccagag gtgacctatg aggcagacaa
      721 ggattccttg tggacactgc tattcatcaa cttggacgga cacctgctgg agccggacgc
      781 tgagtatgtt cactggctgc taaccaacat cccaagcaac agagtggctg aaggacagga
      841 gacatgtccc tacctccctc ctttccctgc tcgaggctct ggcttccacc gctttgcctt
      901 cttgctcttc aagcaggaca agccaatcaa cttctcagag gacacccgtc cctcaccctg
      961 ctaccagctg gcccagagga ccttccgcac ttttgatttc tacaagagac accaggaagc
     1021 catgactcca gccggtctgg cttttttcca gtgccgctgg gatgactctg tcacccacac
     1081 cttccaccag cttctagaca tgcgggaacc tgtgtttgaa tttgtacggc caccccctta
     1141 ccaccccaaa cagaagcgct tcccccacga gcagccccta cgctatctgg accgatacag
     1201 ggacagtcat gagcccacct atggaatcta ctgagagact cagtacattc atctccgagg
     1261 gggaactgtc gcagcagctg gaaggtcaca cctccggaga gagccatctg aagccaactg
     1321 agacagtccc atgctggcct ctcccaggac acccaggggc ttgtggatgt gcctcgattc
     1381 tatgtgaata aaatactttt ttcctgatgc c
//
