LOCUS       NM_025430               3695 bp    mRNA    linear   ROD 03-JUN-2024
DEFINITION  Mus musculus mitochondrial ribosomal protein L35 (Mrpl35), mRNA.
ACCESSION   NM_025430
VERSION     NM_025430.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3695)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3695)
  AUTHORS   Cheong,A., Lingutla,R. and Mager,J.
  TITLE     Expression analysis of mammalian mitochondrial ribosomal protein
            genes
  JOURNAL   Gene Expr Patterns 38, 119147 (2020)
   PUBMED   32987154
REFERENCE   3  (bases 1 to 3695)
  AUTHORS   Liu,X., Jiao,Y., Cao,Y., Deng,N., Ma,Y., Hasty,K.A., Kang,A.,
            Chen,H., Stuart,J.M. and Gu,W.
  TITLE     Decreased expression levels of Ifi genes is associated to the
            increased resistance to spontaneous arthritis disease in mice
            deficiency of IL-1RA
  JOURNAL   BMC Immunol 17 (1), 25 (2016)
   PUBMED   27480124
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 3695)
  AUTHORS   Greber,B.J. and Ban,N.
  TITLE     Structure and Function of the Mitochondrial Ribosome
  JOURNAL   Annu Rev Biochem 85, 103-132 (2016)
   PUBMED   27023846
  REMARK    Review article
REFERENCE   5  (bases 1 to 3695)
  AUTHORS   Brown,A., Amunts,A., Bai,X.C., Sugimoto,Y., Edwards,P.C.,
            Murshudov,G., Scheres,S.H.W. and Ramakrishnan,V.
  TITLE     Structure of the large ribosomal subunit from human mitochondria
  JOURNAL   Science 346 (6210), 718-722 (2014)
   PUBMED   25278503
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BB615775.1, AK004385.1 and AC122200.4.
            
            On Dec 18, 2009 this sequence version replaced NM_025430.2.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK039187.1, AK004385.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384, SAMN01164134
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: reported by MitoCarta
            RefSeq Select criteria             :: based on single
                                                  protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-15                BB615775.1         1-15
            16-1584             AK004385.1         9-1577
            1585-3695           AC122200.4         84516-86626         c
FEATURES             Location/Qualifiers
     source          1..3695
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="6"
                     /map="6 32.21 cM"
     gene            1..3695
                     /gene="Mrpl35"
                     /gene_synonym="1110066C01Rik"
                     /note="mitochondrial ribosomal protein L35"
                     /db_xref="GeneID:66223"
                     /db_xref="MGI:MGI:1913473"
     exon            1..69
                     /gene="Mrpl35"
                     /gene_synonym="1110066C01Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             27..593
                     /gene="Mrpl35"
                     /gene_synonym="1110066C01Rik"
                     /note="39S ribosomal protein L35, mitochondrial; L35mt;
                     MRP-L35"
                     /codon_start=1
                     /product="large ribosomal subunit protein bL35m"
                     /protein_id="NP_079706.1"
                     /db_xref="CCDS:CCDS20234.1"
                     /db_xref="GeneID:66223"
                     /db_xref="MGI:MGI:1913473"
                     /translation="MAASIFTGAVRAASGIFRPLNVLASSTYRNCARNACLNSSLCTI
                     HFRHIQTSVVSSAPRLVTSVGHLAYGHTTTVLNRVATLVPSVLKPPVRALTYCSTRKG
                     KRKTVKSVVHRFLRLHSGLWLRRKAGYKKKLWKKSTARKKRLREFVFCSKTQSKLLDK
                     MTTSFWKRRNWYAGDPYQMYHDRTNLRV"
     exon            70..259
                     /gene="Mrpl35"
                     /gene_synonym="1110066C01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            260..404
                     /gene="Mrpl35"
                     /gene_synonym="1110066C01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            405..3695
                     /gene="Mrpl35"
                     /gene_synonym="1110066C01Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      723..728
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Mrpl35"
                     /gene_synonym="1110066C01Rik"
                     /note="hexamer: ATTAAA"
     regulatory      751..756
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Mrpl35"
                     /gene_synonym="1110066C01Rik"
                     /note="hexamer: ACTAAA"
     polyA_site      757
                     /gene="Mrpl35"
                     /gene_synonym="1110066C01Rik"
                     /note="major polyA site"
     polyA_site      787
                     /gene="Mrpl35"
                     /gene_synonym="1110066C01Rik"
     regulatory      953..958
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Mrpl35"
                     /gene_synonym="1110066C01Rik"
                     /note="hexamer: AATAAA"
     polyA_site      976
                     /gene="Mrpl35"
                     /gene_synonym="1110066C01Rik"
     regulatory      1564..1569
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Mrpl35"
                     /gene_synonym="1110066C01Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1584
                     /gene="Mrpl35"
                     /gene_synonym="1110066C01Rik"
     regulatory      3589..3594
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Mrpl35"
                     /gene_synonym="1110066C01Rik"
                     /note="hexamer: AGTAAA"
     polyA_site      3610
                     /gene="Mrpl35"
                     /gene_synonym="1110066C01Rik"
     regulatory      3671..3676
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Mrpl35"
                     /gene_synonym="1110066C01Rik"
                     /note="hexamer: AGTAAA"
     polyA_site      3691
                     /gene="Mrpl35"
                     /gene_synonym="1110066C01Rik"
ORIGIN      
        1 tgcggccacc gtaggcaggc tgcaagatgg cggcttccat cttcacgggc gccgtgagag
       61 ctgcctcagg aatatttcgt cccttgaatg tcttggcatc ttcaacctat cggaactgcg
      121 ccaggaatgc ctgtcttaat tcttcactgt gcaccattca ttttagacat attcagacat
      181 cagttgtttc ctctgctcca agacttgtca catctgttgg acacctggca tatgggcata
      241 ccacaacagt ccttaataga gtggccacat tggttcccag tgtcctgaag ccaccagtca
      301 gagctctaac atactgcagc acacggaaag gcaagagaaa gacggtaaag tcggtcgtgc
      361 atcgcttcct ccgacttcat tctggccttt ggctaaggag aaaggctggc tataagaaaa
      421 aattatggaa aaagtcaact gcaagaaaga agcgcttgag ggaatttgtg ttctgcagca
      481 agacccagag taaactcctg gataaaatga cgacatcttt ctggaagagg cgcaactggt
      541 acgctggcga tccttaccag atgtaccacg atcgaacaaa cctacgagta tagttcagag
      601 ctatcatagt tcccagctat ggaatgtggg tctttgtgta cataatgccc ttgcaaagtg
      661 agtatgcgtt aaactgtaaa ctgtaccagc tgatcggcaa gcttagatta ccaccattgt
      721 gcattaaaca ttcccagagt tggtcataga actaaaagtt aaatttattg tgcattattt
      781 caaaaaactg gtaatggctt tccttatttc tggaatcttg gatgaggaaa aacacgaaaa
      841 gacgctcaac agtgggcctt tgtgtggaat tgagatggta tccaggtttt tgcacatgct
      901 aaacagacat cttacatgcc tattcccaat atgacacatg ctgtgtttaa aaaataaata
      961 cctaggaact caggaacctc ctcactgtct cctacctgta actctctgcc ccagctttgg
     1021 ggagggcagg aattggatga agcaagagat ggtgggactt tatgccttgg ttctactgtg
     1081 agagtgtgtg gtgtgtgtgt gtgtgtgtgt gtctactcac catcactctc tttagtcttg
     1141 gcttttgttt atgtaaagtt tctatctctc agactccctt cagcctgaac ctttgggttc
     1201 cctttaacat tacaaccctc aactcttgtc atctcttctc tcttaattgc cagggaactc
     1261 tcattgggcc atcctgcctt ttcctcgtaa gtctgaatca atgccatcat gcaatgtaga
     1321 gcttatctgt ttgtggctag gactccaccc aggctctctt agttgtatca gtaggttcat
     1381 atggagtaaa aaggtaggtg tgagctgttt tccttagagg tacatagagt agcagggcac
     1441 tttcatcttg tgtcctgggt tctttgtatt tatgacagtt attactaatt ttattgtaac
     1501 aggatacttt tcataaaaat aaatcacctt cccaaatacc cttcttgaaa tacatagcta
     1561 tataataaac tcttttgccc agtttttctt ttctacttta ctttttattt tttacatatg
     1621 agtattttgt ctgcatgtgt gtatgtgccc ttgaaggcca gaggaaagtt gttgggtcta
     1681 ctggcattgg aattacagat ggttgtgagc caccatgttg gtgctgggaa ttgaacctgg
     1741 gccctctaca agaacagcca gttcttaaat gctgaactgt ctctccaggc ctctgcccaa
     1801 tttttcaaag gcactgaatt tttaaaaagt ttatccactt aagatttctt attttcattg
     1861 gtaaagatca gctttttttt tccagaattc tctaaaacgc agggtggaaa ctaagggaga
     1921 aagttgcctg tcatttaatg agactgatgt cagctgtgct cagaaggcaa cagtatcatt
     1981 cattttatct ttttgtttgt ttgtttgttt gttttttcaa gacagggttt ctctggctgt
     2041 cctggaactc tttgtagacc aggctggcct cgaactcaga aatcagcctg cctctgcctc
     2101 ctgagtgctg ggattaaagg cgtgggccac cacgcccagc tagtatcatt cattttagaa
     2161 aagagtctgg ccattccatc ctgaatgcac atgactttgt ctgatctcag aagctaagta
     2221 gggtcaggtc gggcctgtta gtagtcagat ggagaaagat gcaaaagtta cacgtggttt
     2281 acagagagtc agaattgatg ctgcaggccg agagagtgac tctctgctct cccatcagaa
     2341 ccatctggaa gcatttccaa acaaagcagc ctgcctcatt gaaaattcta ttaaggatga
     2401 atgactgttt gaaatccatt gatgataaca tgaagtcccc catttagtag aataaggcaa
     2461 tcagttggtg ttttgatggc aggtaggcca ggactttgag gaccattcag tttttgtttt
     2521 gttttgtttt gttttgcttt gttttgtttt gttttgtttt tcgagacagg gtttctctgt
     2581 gtagccctgg ctgtcctgga actcactttg tagaccaggc tggcttcgaa ctcagaaatc
     2641 cgcctgcctc tgcctcccga gtgctgggat taaaggcgtg tgccaccact gcccagctta
     2701 ggtttgtttt ttttttaatt tttttttaat ttatccattt gaagccagtt cttcattaaa
     2761 tggagaggga tgtagaatgt cgtaaaaccc catatgtgtg tatgtgtgta tgtgtggggg
     2821 caggtgatag agagcaggcg tgtgacttga gcacctcata caccaatggc tctgccccgg
     2881 tggctcgtgc tgtgctcacc cctgaggcgg cagaagctga gtgctgtgag gctttcgagg
     2941 ttcctcgcct gcacagttcc tgcttcccgc acatctgtgg cactgtgctg aagctaagga
     3001 gggagacact gcacagcctt agacttttct agagtcgaca tggatggttc agatctctgt
     3061 tacatggcct cagtgccttg gcttcccctg tagccaagga caggctaggc agaggacagc
     3121 ggccacaggc tgaagtagaa gggctgcagg cacacctcgg atggaaaggg aacttcttca
     3181 tacatacagc ttttgtatgt gggtagggga gcctttcatc aaagccaagt ttttagtttg
     3241 acaacaaagc agtttgcttt agagcctgcc taaatgatgt tcaagtgtat gcataactgt
     3301 ttatttacat gtaatttatt gaacacttgt catatttaag caaatctgca aaactctgct
     3361 gcacctcatg ccaaccttat acaatcttat acacgagcta tcatttatcc ctgatataaa
     3421 ttgaaggcac taaagcttat agaagctgaa ataaattact ctaaaatata gctaatgcat
     3481 cccagatccc ctgtctaact ctttggaatc ttgtgtactt cctttgattt tctaacaaca
     3541 taggatactc atatcttgat caacaaatga ctgtgatctg acactagtag taaatactct
     3601 acccgttcaa gtctgagttg tgtgactttg ctctctacct gtcaactctg ttggtgcata
     3661 accctggctt agtaaatgag taatgaatga atgga
//
