LOCUS       NM_025606               1134 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus mitochondrial ribosomal protein L16 (Mrpl16), mRNA.
ACCESSION   NM_025606
VERSION     NM_025606.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1134)
  AUTHORS   Cheong,A., Lingutla,R. and Mager,J.
  TITLE     Expression analysis of mammalian mitochondrial ribosomal protein
            genes
  JOURNAL   Gene Expr Patterns 38, 119147 (2020)
   PUBMED   32987154
REFERENCE   2  (bases 1 to 1134)
  AUTHORS   Greber,B.J. and Ban,N.
  TITLE     Structure and Function of the Mitochondrial Ribosome
  JOURNAL   Annu Rev Biochem 85, 103-132 (2016)
   PUBMED   27023846
  REMARK    Review article
REFERENCE   3  (bases 1 to 1134)
  AUTHORS   Brown,A., Amunts,A., Bai,X.C., Sugimoto,Y., Edwards,P.C.,
            Murshudov,G., Scheres,S.H.W. and Ramakrishnan,V.
  TITLE     Structure of the large ribosomal subunit from human mitochondria
  JOURNAL   Science 346 (6210), 718-722 (2014)
   PUBMED   25278503
REFERENCE   4  (bases 1 to 1134)
  AUTHORS   O'Leary,J. and Osborne,L.R.
  TITLE     Global analysis of gene expression in the developing brain of
            Gtf2ird1 knockout mice
  JOURNAL   PLoS One 6 (8), e23868 (2011)
   PUBMED   21909369
REFERENCE   5  (bases 1 to 1134)
  AUTHORS   Suzuki,T., Terasaki,M., Takemoto-Hori,C., Hanada,T., Ueda,T.,
            Wada,A. and Watanabe,K.
  TITLE     Structural compensation for the deficit of rRNA with proteins in
            the mammalian mitochondrial ribosome. Systematic analysis of
            protein components of the large ribosomal subunit from mammalian
            mitochondria
  JOURNAL   J Biol Chem 276 (24), 21724-21736 (2001)
   PUBMED   11279069
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC126036.4.
            
            On Nov 17, 2006 this sequence version replaced NM_025606.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB049643.1, CA322826.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: reported by MitoCarta
            RefSeq Select criteria             :: based on single
                                                  protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-110               AC126036.4         9492-9601           c
            111-176             AC126036.4         9149-9214           c
            177-325             AC126036.4         6993-7141           c
            326-1134            AC126036.4         5060-5868           c
FEATURES             Location/Qualifiers
     source          1..1134
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="19"
                     /map="19 8.52 cM"
     gene            1..1134
                     /gene="Mrpl16"
                     /gene_synonym="2310039D06Rik"
                     /note="mitochondrial ribosomal protein L16"
                     /db_xref="GeneID:94063"
                     /db_xref="MGI:MGI:2137219"
     exon            1..110
                     /gene="Mrpl16"
                     /gene_synonym="2310039D06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            111..176
                     /gene="Mrpl16"
                     /gene_synonym="2310039D06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            177..325
                     /gene="Mrpl16"
                     /gene_synonym="2310039D06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            326..1134
                     /gene="Mrpl16"
                     /gene_synonym="2310039D06Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      954..959
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Mrpl16"
                     /gene_synonym="2310039D06Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      981
                     /gene="Mrpl16"
                     /gene_synonym="2310039D06Rik"
                     /note="major polyA site"
ORIGIN      
        1 ggaaaagcca ctgttgtagt tgagagaaac ctgacccggc agcacacgcg tggccatgtg
       61 gaggctgttg acgcgcgtcc ccgcgccgct cctgcggatg cacttttcag attcttgggc
      121 agcccttccc accagtgctg gtctgaagac gctcctccca gttccaactt ttgaaaatgt
      181 ctccatccct gaaaggtcca agcttaaatt tgttgaaaga gtcccacttg tgccaaaagt
      241 aagaagagaa cctaaaaatt tgaaggacat acgagggcct tcaactgaag ccactgactt
      301 tacagaaggc aattttgcaa ttttggcact tggcggtggt tatctccatt ggggccattt
      361 tgaaatgatg cgcttgacaa tcaaccgctt tatggatccc aagaacatgt ttgccatctg
      421 gcgagtgcca gcccctttca agcccatcac tcgcaaaggt gttgggcagc gcatgggggg
      481 aggtaaaggt gccatcgatc actatgtgac acctgtgaag actggctgcc tagtagtaga
      541 gatgggtgga cggtgtgaat ttgaagaggt aaaaggtatc ctgaaccaag ttgctcacaa
      601 gttacccttt ccggcaaagg ctgtgagccg taagactcta gagaggatgc accaaaatca
      661 aagagagaga gaacttaaca accaaaaccc ctggaccttt gagcacatag ccactgccaa
      721 catgtttggc atacggaaat tcctgagccc atatgacttg acgcagaaag ggcgatactg
      781 gggcaaattc tacatgccca agcgtgtgta gtgaaagcgc gaggaacatg tgcgcagcct
      841 cctgagcgac aatctgcgcc tttactgtcc tgagggtctt tgctggttct tggatcctaa
      901 ctaagcacat gagtgagtga cttctgaaaa actgtgtcac ctggttgatt ctaattaaag
      961 tttgaatgta acctcagggt acaacttctc tttggtcagt ttcagttgct tacaggatta
     1021 aggacagttt gatagccagc tgtcccagca ctcaggaggc aaagatgggt ggatctcatt
     1081 tgtgttcaag gccagtcaca tctacaagca agatcctgtc tcaaaaaaaa aaaa
//
