LOCUS       NM_026759                786 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Mus musculus mitochondrial ribosomal protein L13 (Mrpl13), mRNA.
ACCESSION   NM_026759
VERSION     NM_026759.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 786)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 786)
  AUTHORS   Cheong,A., Lingutla,R. and Mager,J.
  TITLE     Expression analysis of mammalian mitochondrial ribosomal protein
            genes
  JOURNAL   Gene Expr Patterns 38, 119147 (2020)
   PUBMED   32987154
REFERENCE   3  (bases 1 to 786)
  AUTHORS   Greber,B.J. and Ban,N.
  TITLE     Structure and Function of the Mitochondrial Ribosome
  JOURNAL   Annu Rev Biochem 85, 103-132 (2016)
   PUBMED   27023846
  REMARK    Review article
REFERENCE   4  (bases 1 to 786)
  AUTHORS   Brown,A., Amunts,A., Bai,X.C., Sugimoto,Y., Edwards,P.C.,
            Murshudov,G., Scheres,S.H.W. and Ramakrishnan,V.
  TITLE     Structure of the large ribosomal subunit from human mitochondria
  JOURNAL   Science 346 (6210), 718-722 (2014)
   PUBMED   25278503
REFERENCE   5  (bases 1 to 786)
  AUTHORS   Bogenhagen,D.F., Martin,D.W. and Koller,A.
  TITLE     Initial steps in RNA processing and ribosome assembly occur at
            mitochondrial DNA nucleoids
  JOURNAL   Cell Metab 19 (4), 618-629 (2014)
   PUBMED   24703694
REFERENCE   6  (bases 1 to 786)
  AUTHORS   Camara,Y., Asin-Cayuela,J., Park,C.B., Metodiev,M.D., Shi,Y.,
            Ruzzenente,B., Kukat,C., Habermann,B., Wibom,R., Hultenby,K.,
            Franz,T., Erdjument-Bromage,H., Tempst,P., Hallberg,B.M.,
            Gustafsson,C.M. and Larsson,N.G.
  TITLE     MTERF4 regulates translation by targeting the methyltransferase
            NSUN4 to the mammalian mitochondrial ribosome
  JOURNAL   Cell Metab 13 (5), 527-539 (2011)
   PUBMED   21531335
REFERENCE   7  (bases 1 to 786)
  AUTHORS   Katayama,K., Furuno,A., Akiyama,K., Tsuji,T. and Kunieda,T.
  TITLE     Characterization of chromosomal inversion of the mouse hairy ears
            (Eh) mutation associated with cleft palate
  JOURNAL   Mamm Genome 18 (4), 246-254 (2007)
   PUBMED   17520166
REFERENCE   8  (bases 1 to 786)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   9  (bases 1 to 786)
  AUTHORS   Suzuki,T., Terasaki,M., Takemoto-Hori,C., Hanada,T., Ueda,T.,
            Wada,A. and Watanabe,K.
  TITLE     Structural compensation for the deficit of rRNA with proteins in
            the mammalian mitochondrial ribosome. Systematic analysis of
            protein components of the large ribosomal subunit from mammalian
            mitochondria
  JOURNAL   J Biol Chem 276 (24), 21724-21736 (2001)
   PUBMED   11279069
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AK003283.2.
            
            On Apr 6, 2007 this sequence version replaced NM_026759.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK003283.2, BC060968.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164135
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: reported by MitoCarta
            RefSeq Select criteria             :: based on single
                                                  protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-786               AK003283.2         2-787
FEATURES             Location/Qualifiers
     source          1..786
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 22.02 cM"
     gene            1..786
                     /gene="Mrpl13"
                     /gene_synonym="1110002D09Rik"
                     /note="mitochondrial ribosomal protein L13"
                     /db_xref="GeneID:68537"
                     /db_xref="MGI:MGI:2137218"
     exon            1..55
                     /gene="Mrpl13"
                     /gene_synonym="1110002D09Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             29..565
                     /gene="Mrpl13"
                     /gene_synonym="1110002D09Rik"
                     /EC_number="3.6.5.3"
                     /note="39S ribosomal protein L13, mitochondrial; L13mt;
                     MRP-L13"
                     /codon_start=1
                     /product="large ribosomal subunit protein uL13m"
                     /protein_id="NP_081035.1"
                     /db_xref="CCDS:CCDS27477.1"
                     /db_xref="GeneID:68537"
                     /db_xref="MGI:MGI:2137218"
                     /translation="MSSFSRAPQQWATFARMWYLLDGKMQPPGKLAVIASNKLQGLNK
                     PVYHQLSDCGDHVVIINTRHIAFSGNKWEQKVYSSHTGYPGGFRQVTAAQLHRKDPVA
                     IVKLAIYGMLPKNLHRRTMMQRLHLFPDEDIPEDILKNLVEELPQPRRVPKRLDEYTQ
                     EEIEAFPRVWTPPDDFRM"
     exon            56..179
                     /gene="Mrpl13"
                     /gene_synonym="1110002D09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            180..273
                     /gene="Mrpl13"
                     /gene_synonym="1110002D09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            274..334
                     /gene="Mrpl13"
                     /gene_synonym="1110002D09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            335..421
                     /gene="Mrpl13"
                     /gene_synonym="1110002D09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            422..543
                     /gene="Mrpl13"
                     /gene_synonym="1110002D09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            544..786
                     /gene="Mrpl13"
                     /gene_synonym="1110002D09Rik"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      786
                     /gene="Mrpl13"
                     /gene_synonym="1110002D09Rik"
                     /note="putative"
ORIGIN      
        1 aagtaaagga cgccgcgggt cggagagcat gtccagcttc tctagggcgc cccagcaatg
       61 ggccactttt gctcgaatgt ggtatctctt agatggcaaa atgcagcccc ctggcaaact
      121 tgcggttata gcatccaaca aactgcaagg attaaataaa ccagtgtacc atcagctgag
      181 tgactgtgga gaccacgttg tcataataaa cacaagacat attgcatttt ctggaaacaa
      241 atgggaacaa aaagtgtact cctcacatac tggctaccca ggcggcttta gacaagtaac
      301 agctgcgcag cttcaccgga aagaccccgt ggcgattgtg aaattggcta tttatggcat
      361 gctgcccaaa aacctgcaca gaaggacaat gatgcaaagg ctgcatcttt tcccagacga
      421 ggatattccg gaagatattc ttaagaattt agtggaagag cttcctcagc cacggagagt
      481 gcctaaacgg ctggacgagt acacccaaga agaaatagag gctttcccca gagtgtggac
      541 tccacctgat gattttcgga tgtaggagaa tggaaatgat agaacattac agcaagagac
      601 tgaatgtttc ctgaagtatt accatgaccc aaggcagaga gaaaccatgg gaactccctg
      661 tggggaacac tcaagaaggc caagcctcag caggaaagtg cagtagaaga tactgtttta
      721 cagacaagtc ctgtgtaacc tgctttaaat gctacacatg ttaataaaat gcttatttgg
      781 ttagct
//
