LOCUS       NM_001416024            4078 bp    mRNA    linear   ROD 14-JUN-2024
DEFINITION  Mus musculus metallophosphoesterase domain containing 1 (Mpped1),
            transcript variant 6, mRNA.
ACCESSION   NM_001416024 XM_036159358
VERSION     NM_001416024.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4078)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4078)
  AUTHORS   Knupp,D., Cooper,D.A., Saito,Y., Darnell,R.B. and Miura,P.
  TITLE     NOVA2 regulates neural circRNA biogenesis
  JOURNAL   Nucleic Acids Res 49 (12), 6849-6862 (2021)
   PUBMED   34157123
REFERENCE   3  (bases 1 to 4078)
  AUTHORS   Telley,L., Agirman,G., Prados,J., Amberg,N., Fievre,S., Oberst,P.,
            Bartolini,G., Vitali,I., Cadilhac,C., Hippenmeyer,S., Nguyen,L.,
            Dayer,A. and Jabaudon,D.
  TITLE     Temporal patterning of apical progenitors and their daughter
            neurons in the developing neocortex
  JOURNAL   Science 364 (6440) (2019)
   PUBMED   31073041
REFERENCE   4  (bases 1 to 4078)
  AUTHORS   Thompson,C.L., Ng,L., Menon,V., Martinez,S., Lee,C.K.,
            Glattfelder,K., Sunkin,S.M., Henry,A., Lau,C., Dang,C.,
            Garcia-Lopez,R., Martinez-Ferre,A., Pombero,A., Rubenstein,J.L.R.,
            Wakeman,W.B., Hohmann,J., Dee,N., Sodt,A.J., Young,R., Smith,K.,
            Nguyen,T.N., Kidney,J., Kuan,L., Jeromin,A., Kaykas,A., Miller,J.,
            Page,D., Orta,G., Bernard,A., Riley,Z., Smith,S., Wohnoutka,P.,
            Hawrylycz,M.J., Puelles,L. and Jones,A.R.
  TITLE     A high-resolution spatiotemporal atlas of gene expression of the
            developing mouse brain
  JOURNAL   Neuron 83 (2), 309-323 (2014)
   PUBMED   24952961
REFERENCE   5  (bases 1 to 4078)
  AUTHORS   Miller,J.A., Nathanson,J., Franjic,D., Shim,S., Dalley,R.A.,
            Shapouri,S., Smith,K.A., Sunkin,S.M., Bernard,A., Bennett,J.L.,
            Lee,C.K., Hawrylycz,M.J., Jones,A.R., Amaral,D.G., Sestan,N.,
            Gage,F.H. and Lein,E.S.
  TITLE     Conserved molecular signatures of neurogenesis in the hippocampal
            subgranular zone of rodents and primates
  JOURNAL   Development 140 (22), 4633-4644 (2013)
   PUBMED   24154525
REFERENCE   6  (bases 1 to 4078)
  AUTHORS   Boyle,M.P., Bernard,A., Thompson,C.L., Ng,L., Boe,A., Mortrud,M.,
            Hawrylycz,M.J., Jones,A.R., Hevner,R.F. and Lein,E.S.
  TITLE     Cell-type-specific consequences of Reelin deficiency in the mouse
            neocortex, hippocampus, and amygdala
  JOURNAL   J Comp Neurol 519 (11), 2061-2089 (2011)
   PUBMED   21491433
REFERENCE   7  (bases 1 to 4078)
  AUTHORS   Chen,C.M., Wang,H.Y., You,L.R., Shang,R.L. and Liu,F.C.
  TITLE     Expression analysis of an evolutionarily conserved
            metallophosphodiesterase gene, Mpped1, in the normal and
            beta-catenin-deficient malformed dorsal telencephalon
  JOURNAL   Dev Dyn 239 (6), 1797-1806 (2010)
   PUBMED   20503375
REFERENCE   8  (bases 1 to 4078)
  AUTHORS   Brady,K.P., Rowe,L.B., Her,H., Stevens,T.J., Eppig,J.,
            Sussman,D.J., Sikela,J. and Beier,D.R.
  TITLE     Genetic mapping of 262 loci derived from expressed sequences in a
            murine interspecific cross using single-strand conformational
            polymorphism analysis
  JOURNAL   Genome Res 7 (11), 1085-1093 (1997)
   PUBMED   9371744
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL591964.38 and AL513354.14.
            
            On Jan 11, 2023 this sequence version replaced XM_036159358.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR10662772.1459207.1,
                                           SRR10662774.2671407.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164132
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-898               AL591964.38        72372-73269
            899-1203            AL513354.14        3276-3580
            1204-1385           AL513354.14        11325-11506
            1386-1611           AL513354.14        47595-47820
            1612-1727           AL513354.14        63362-63477
            1728-1841           AL513354.14        65734-65847
            1842-4078           AL513354.14        67570-69806
FEATURES             Location/Qualifiers
     source          1..4078
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 39.44 cM"
     gene            1..4078
                     /gene="Mpped1"
                     /gene_synonym="6230403M19; D15Bwg0669e"
                     /note="metallophosphoesterase domain containing 1"
                     /db_xref="GeneID:223726"
                     /db_xref="MGI:MGI:106316"
     exon            1..898
                     /gene="Mpped1"
                     /gene_synonym="6230403M19; D15Bwg0669e"
                     /inference="alignment:Splign:2.1.0"
     exon            899..1203
                     /gene="Mpped1"
                     /gene_synonym="6230403M19; D15Bwg0669e"
                     /inference="alignment:Splign:2.1.0"
     CDS             980..1960
                     /gene="Mpped1"
                     /gene_synonym="6230403M19; D15Bwg0669e"
                     /note="isoform 1 precursor is encoded by transcript
                     variant 6; metallophosphoesterase domain-containing
                     protein 1"
                     /codon_start=1
                     /product="metallophosphoesterase domain-containing protein
                     1 isoform 1 precursor"
                     /protein_id="NP_001402953.1"
                     /db_xref="GeneID:223726"
                     /db_xref="MGI:MGI:106316"
                     /translation="MWRPRWDPGILKAEALALLPCGLGMAFSQSHVMASRRHQHGRLI
                     IEVDEYSSNPTQAFTFYNINQGRFQPPHVQMVDPVPHDAPKPPGYTRFVCVSDTHSRT
                     DPIQMPYGDVLIHAGDFTELGLPSEVKKFNEWLGSLPYEYKIVIAGNHELTFDQEFMA
                     DLIKQDFYYFPSVSKLKPENYENVQSLLTNCIYLQDSEVTVRGFRIYGSPWQPWFYGW
                     GFNLPRGQALLEKWNLIPEGVDILITHGPPLGFLDWVPKKMQRVGCVELLNTVQRRVQ
                     PRLHVFGHIHEGYGVMADGTTTYVNASVCTVNYQPVNPPIVIDLPTPRNS"
     exon            1204..1385
                     /gene="Mpped1"
                     /gene_synonym="6230403M19; D15Bwg0669e"
                     /inference="alignment:Splign:2.1.0"
     exon            1386..1611
                     /gene="Mpped1"
                     /gene_synonym="6230403M19; D15Bwg0669e"
                     /inference="alignment:Splign:2.1.0"
     exon            1612..1727
                     /gene="Mpped1"
                     /gene_synonym="6230403M19; D15Bwg0669e"
                     /inference="alignment:Splign:2.1.0"
     exon            1728..1841
                     /gene="Mpped1"
                     /gene_synonym="6230403M19; D15Bwg0669e"
                     /inference="alignment:Splign:2.1.0"
     exon            1842..4078
                     /gene="Mpped1"
                     /gene_synonym="6230403M19; D15Bwg0669e"
                     /inference="alignment:Splign:2.1.0"
     regulatory      4055..4060
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Mpped1"
                     /gene_synonym="6230403M19; D15Bwg0669e"
                     /note="hexamer: AATAAA"
     polyA_site      4078
                     /gene="Mpped1"
                     /gene_synonym="6230403M19; D15Bwg0669e"
                     /note="major polyA site"
ORIGIN      
        1 agaatgcatt cattggagga agaggtaaaa gctcagagac agagggactg gatgcaggga
       61 ccttagagcc taagctagtc tctcctcatc ctattagcat agctatagaa caatttcaag
      121 gccactggga tctctgtggg tcagatgtcc tcctgcccag ccccctcccc gcccccgtga
      181 tgcttctgag ggtcaaagtc agaatagggg caccagaaat caaaacagcc attaggaaga
      241 gtcaccagta taagaacaag accttgagca gtggcagaac caagaacacc ctgtctctca
      301 tggtcctcag ctgttaagtg ctgacctagg gtgactgcta gtgggacttc tctgggtacc
      361 gcagcacctg tgaatctggg ctggggaatg ggcagattca aaggggaagc tgccctgcct
      421 gaccccaagt tccccagctg gttccacttt agaactgtag cgacttctcc ggtctattct
      481 gttgagtcct tgagtttcta cccacttttg aagcttttcc tgcagacacg tgcccaggct
      541 gggtgtctgc cctgctggct ctggactgta cagtggccag acttgggtct gtgccaggct
      601 gctgcagctg ttccgccttg gagtgatgac agtagctgat ggcttgacaa gtggcccttg
      661 ggaggtggca tctcatctgg gcagttgccc agcaggaggg ccatttgagg aggagaacag
      721 agccccgagg gtaggagact cccagaattg acccaaagag attgggaaag tgtgtgtgtg
      781 tgtgtcccat ggggacccca tagaaagtgt gagtatagga tttggagtct acctcacggt
      841 gagccttggc ttgtcactgg atggctctga gactgtcttc ggacctgcat aagttgagtc
      901 tgttcgcagg tctggcgggg gacccggcga cggtcgtggt ggtggcagcg gtggcgctgg
      961 gagatgccca cggaggtcca tgtggcgccc taggtgggat cctggcatcc tgaaggctga
     1021 agccctggcc ctgctcccct gtggcctggg catggcgttc tctcagtctc acgtgatggc
     1081 ctctcgacgg caccaacatg gccgactcat catcgaggtg gacgaataca gctccaatcc
     1141 cacccaggcc ttcaccttct acaatatcaa ccagggccgc ttccagccac ctcacgtgca
     1201 gatggtggac ccagtgcctc acgatgcccc aaagccacct ggctacacac gttttgtctg
     1261 tgtttctgac actcactcaa ggacagatcc cattcaaatg ccctacggcg atgtgctgat
     1321 ccacgctggg gacttcacgg aactggggct cccaagcgag gtgaagaagt tcaatgaatg
     1381 gctgggcagc ctgccctatg agtacaagat cgtgattgcg ggcaaccacg agctgacctt
     1441 cgaccaggag ttcatggccg acctcatcaa gcaggacttt tattatttcc cgtccgtgtc
     1501 caagctgaag ccggagaact atgagaacgt gcagtctctg ctgaccaact gcatctacct
     1561 gcaggactca gaggtcacgg tgcgtggctt ccggatctac ggctccccgt ggcagccctg
     1621 gttctatggc tggggattca acctcccgag aggccaagcg ctcctggaga agtggaatct
     1681 catcccagaa ggagtagaca tccttataac tcatggacca ccactgggct ttctagactg
     1741 ggtccccaag aagatgcagc gtgtgggctg tgtggagctg ctcaacacag tccagaggcg
     1801 ggtccagcca cggctgcacg tctttggcca catccatgaa gggtatggcg tcatggcaga
     1861 cgggaccacc acctatgtga acgcgtcggt gtgcactgtg aactatcagc ctgtgaatcc
     1921 ccccatagtc atcgacctgc ccacaccccg gaactcctga ctgctaccca ctccagttct
     1981 gcctacccat gtcagctctg tatgtctggc caagagcctg gatcccctaa cccacttcct
     2041 cccatgcaga acagcctgga cagtccattt ggcctcggga ccagccagca acgagtagaa
     2101 tccttgggat aaaagaaatc gcctttgtca gctttctgcc gcctgctgct gggaccttga
     2161 acagtcccat cagggccacc aggctcatct ctgtgttctg tgtgtgcatc tgcccctttt
     2221 ttctagagcc taacacactc acagccctgt ctcacttggg aaatgacaga agctcggttc
     2281 gaaagacacc ctccggcttt gagaagccgc tgctctcgga tggaatttgg gaagttttat
     2341 acaagatgtc tagctaccca agtgtgtggc ttgtgagccc caaggttgcg gaagtgtatg
     2401 gcctaggctc gggcagctct tctctggctg gaggaaagga gatagacttg ttccttacgt
     2461 gcatgggtct tgggaatgtt cagggacatc tcaggaattc cgacagcccc cggccaggcc
     2521 tagagcagat ggcttggctt agtcccccat tccttcctca ggaccctgct gccaatgtgg
     2581 acaatggctg agtgtctcca gcttctggct cagaacctgg atttggggag gggagctttg
     2641 ttcttctggg tggccagaac ctgctggtta ctcatcacag tgaggccatc ttagatcatc
     2701 tgggaccaca ctactttgta gatcacgatg gccaggggat tctgtgggct gagacctatg
     2761 cctggtcatg tacatgcccc atgtctgtgg catgtgtgtg cttctccaaa cctaaccagg
     2821 ttgttagcat ctacaacgag ctccatcctc catgtgattg atttttcctt ccgagggttc
     2881 caggaagctt gtcagtacca ccagtaaccg ggaggtggcg cagttacaga gccaccccgg
     2941 gtgctgatgg cagctccacc tctggctgca gcctttcttg agctaggcct gggtgaaccc
     3001 atctgcagag gacagagcca gcgggccctg agtcaggggg aggcagagtc catcactgtc
     3061 tatttaaaat gcccatattt gttctttgtg gactcttttt tgcactcatt ccgattctta
     3121 gtaacatgtc actaaaatag tattatttgt cccgactctt gatgttttac accctttatg
     3181 tcatgcatca gacacgaggg cctcacttgc ttggcctggt tccagccttg gggaccagat
     3241 atcctggtac ctttactcgg tataattttg ttttatctac agacattcct gcaaggtagg
     3301 tactcttgcc ctgttacaga gatgagtcca ctgagaggag aggtcacttg cctgaggatg
     3361 cacagcacaa agggggcagc agtgggattt gggcctccat ctctggcctc acacccttcc
     3421 catcaccact ggagttctct ccctgcaaag cagggcctgg gtggagagtc tcgcttcatt
     3481 tggaagggtc cttttcaaaa ctggctcttg ttcattctca acctcgagtc cctcagacca
     3541 tcaggaatcc tgagcttttg gctcagcatc ccagcatcct gtgaggccca ctcccaattc
     3601 tttctctgcg ggtgagtgag ctgggctctg ggatgcattc ccaggccacc tttggtgccc
     3661 tacgttggcc aggggcaact gtgccccaca ggacacaggg ctgcaggaat cttgcttggg
     3721 ccaagtggtc ctggtgtgtg ggacatttta caaggtctct cttcggtgcc tcagatgcat
     3781 ggcgtgtttg gggcagagaa aaatacatct cccatgtgct ttctcagctc cacagtttct
     3841 atatggacca agaactataa acttaaaaaa attttcctag ggcatcttca gaatgcggca
     3901 tatttttatg tggagaagaa aagctgtgga ggcagctgtc ttgaagagaa aattcattgg
     3961 aagtcctcaa gatttgaaag atggcggcct gctcctcaat cattttggca taacttgatt
     4021 gtggctgtaa ttttttttgt caagcatgtc agacaataaa gtctttgtaa aaagaaaa
//
