LOCUS       NM_026913               1231 bp    mRNA    linear   ROD 05-JUN-2024
DEFINITION  Mus musculus MIT, microtubule interacting and transport, domain
            containing 1 (Mitd1), transcript variant 1, mRNA.
ACCESSION   NM_026913 XM_898897 XM_898907 XM_921836 XM_921847 XM_978650
            XM_978698
VERSION     NM_026913.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1231)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1231)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC119189.8.
            
            On Sep 27, 2017 this sequence version replaced NM_026913.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK171903.1, AK005342.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164134, SAMN01164135
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-252               AC119189.8         92714-92965
            253-354             AC119189.8         97809-97910
            355-491             AC119189.8         100427-100563
            492-578             AC119189.8         101340-101426
            579-694             AC119189.8         102077-102192
            695-755             AC119189.8         103505-103565
            756-1231            AC119189.8         103762-104237
FEATURES             Location/Qualifiers
     source          1..1231
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 16.13 cM"
     gene            1..1231
                     /gene="Mitd1"
                     /gene_synonym="1500032H18Rik"
                     /note="MIT, microtubule interacting and transport, domain
                     containing 1"
                     /db_xref="GeneID:69028"
                     /db_xref="MGI:MGI:1916278"
     exon            1..252
                     /gene="Mitd1"
                     /gene_synonym="1500032H18Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             102..851
                     /gene="Mitd1"
                     /gene_synonym="1500032H18Rik"
                     /codon_start=1
                     /product="MIT domain-containing protein 1"
                     /protein_id="NP_081189.1"
                     /db_xref="CCDS:CCDS35542.1"
                     /db_xref="GeneID:69028"
                     /db_xref="MGI:MGI:1916278"
                     /translation="MAKSSLGQDSDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDM
                     LLQVLKGTKESSKRCVLRTKISGYMDRAENIKKYLDQEKEDGKYHKQIKIEENATGFS
                     YESLFREYLHETVTEVWIEDPYIRQTHQLYNFLRFCEMLIKKPCKVRTIHLLTSGYEG
                     LGNTQQSSGLEEIKQSLGSHGVVLEINYSSSIHDREIRFNNGWMIKIGRGLDYFKKPQ
                     GRFSLGYYDLDLRPCHETTVDIFHNKHTKKI"
     exon            253..354
                     /gene="Mitd1"
                     /gene_synonym="1500032H18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            355..491
                     /gene="Mitd1"
                     /gene_synonym="1500032H18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            492..578
                     /gene="Mitd1"
                     /gene_synonym="1500032H18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            579..694
                     /gene="Mitd1"
                     /gene_synonym="1500032H18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            695..755
                     /gene="Mitd1"
                     /gene_synonym="1500032H18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            756..1231
                     /gene="Mitd1"
                     /gene_synonym="1500032H18Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1208..1213
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Mitd1"
                     /gene_synonym="1500032H18Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1231
                     /gene="Mitd1"
                     /gene_synonym="1500032H18Rik"
                     /note="major polyA site"
ORIGIN      
        1 agaagacagc gcaggcgcag cggcgtcacg cgtgcgcttc ctggaagcgc agtgggtcag
       61 ctcttggaat ttgctggcgg tgcccaggag ttgtcacagt gatggctaag tccagcctgg
      121 gacaggattc cgatagcact gcggcggtgg cggtactaaa gcgggcagta gagctggatg
      181 cagagtcccg gtaccagcag gctctggtgt gttaccagga ggggattgac atgctcttgc
      241 aggttctgaa aggcaccaaa gagtccagta aaagatgtgt tctcagaacg aaaatctccg
      301 gctacatgga tagagcagaa aatataaaga aatacttaga tcaagaaaaa gaagatggaa
      361 aatatcacaa gcaaattaaa atagaagaga atgcaactgg cttcagttac gagtcactct
      421 ttagagaata cctacacgag acagttacag aagtttggat agaagaccct tatattagac
      481 aaactcatca gctctataac ttccttcggt tttgtgagat gctgattaag aagccgtgta
      541 aagtaagaac cattcacctt ctcacctctg ggtatgaagg tttggggaac acacagcaaa
      601 gtagtggcct ggaagaaata aagcagtccc tcgggagtca cggagtggtg ctggaaataa
      661 actactcttc atctatacat gaccgagaaa ttaggttcaa caatggatgg atgattaaaa
      721 taggaagggg ccttgattat ttcaagaaac cacagggtcg tttttctctt ggatattatg
      781 atttagactt gagaccgtgt catgaaacaa cagtggacat atttcacaac aagcacacga
      841 aaaaaatatg atgtgtaatg acctaagcat acgtctctgc tgtaggtgac ctcagcccat
      901 tttctgttgc tagaactgaa tactacacac tggataatgt gtaaggatag aggtttgggc
      961 tttggtatct ggagaggatc ttcttccttc tgcatcccac agggcatagt gcaaaaaaga
     1021 tgaagcaggc ttgtgaggca gagcctgaca cctcagaggt tcctcctctc aacactgctg
     1081 tactagggac caagattcga actcatgaac ttctggggcc acattcaaac catagcaaag
     1141 caaatattgg gtttgtttct cctttttatt tactccaaac atatttttta taatgtatga
     1201 atttaacaat aaatgtttac atttctacta a
//
