LOCUS       XM_055019671            1257 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus MINDY lysine 48 deubiquitinase 4B,
            pseudogene (Mindy4b-ps), partial mRNA.
ACCESSION   XM_055019671
VERSION     XM_055019671.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000069.7) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
            COMPLETENESS: incomplete on the 5' end.
FEATURES             Location/Qualifiers
     source          1..1257
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="3"
     gene            <1..1257
                     /gene="Mindy4b-ps"
                     /note="MINDY lysine 48 deubiquitinase 4B, pseudogene;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 5 long SRA reads, 1 Protein, and 95%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:100040293"
                     /db_xref="MGI:MGI:2140018"
     CDS             <1..1254
                     /gene="Mindy4b-ps"
                     /codon_start=1
                     /product="inactive ubiquitin carboxyl-terminal hydrolase
                     MINDY-4B"
                     /protein_id="XP_054875646.1"
                     /db_xref="GeneID:100040293"
                     /db_xref="MGI:MGI:2140018"
                     /translation="HFIQNHDGSHTSAEETGEGSRVFPSPGQEQLPSSMVCSIPRLPG
                     ISSKLHGFPIAPAIATMLKRSLFGNTNQVLGGDWRKAHFKFHDPFSDLAFALQVEKGG
                     AQSIQMAVQGSIIKYLLFTREGKDCSLQSLCNLSQREQEQALAAMLAGILWAAGEAQK
                     AIVCFDTKDIHSTSTLDYSSNNFIERLQLFEFSEKEATEKFVYDHLQCFKGEGSHGVI
                     LFLYSLVLSRTFERLQKDLDTTTTHLLHSQAGGVSCRQAVLNLILTGRASPNVFNGYE
                     EGKSEQSLHGILARSDIGYLQWNKDTSEGDQLSQVGSMLKTPTFPIWLCNINGNYSIL
                     FCTNRQLLSDWKMERVFDLHFYSGQPSQKKPVHLTIDTHSHHWEGEHHEDKHGSGRRF
                     SSLEMVIRTKWREATINWNGTIPFF"
ORIGIN      
        1 catttcatac agaatcacga tggcagccat acatccgctg aggagactgg agaaggatcc
       61 agagtgtttc cgtctccagg acaggaacag ttgccatcca gtatggtctg ttcaattccg
      121 agactccccg gcatctcctc aaagctgcac ggttttccta tcgccccagc aatagccaca
      181 atgttgaaaa gaagcctctt tggaaatact aaccaagtcc ttggcggtga ctggagaaag
      241 gcacatttca agttccacga tcccttctct gatctggctt ttgctttaca agtcgaaaag
      301 ggaggtgccc agagcatcca gatggcagta caaggatcta tcatcaaata cttactgttt
      361 acaagggagg ggaaagactg cagccttcaa agtttatgta acctgagcca gcgtgagcag
      421 gaacaggctc tagctgcgat gctggctggc atcctatggg ctgcaggaga agctcagaaa
      481 gccatcgtct gttttgacac caaagacatc cacagcactt cgactcttga ctactccagc
      541 aacaatttca ttgagaggct ccagctgttt gaattctcag agaaagaagc cactgagaaa
      601 ttcgtctatg atcatttaca gtgtttcaaa ggagaaggaa gtcatggtgt catcctcttc
      661 ctctacagcc tggtcctctc cagaacattt gagaggctcc agaaggacct ggataccacc
      721 accactcatc tcttgcactc ccaagctgga ggtgtctcgt gcaggcaggc agttctaaac
      781 ttgattttga ctgggagagc aagtccaaat gtcttcaatg gctatgagga aggcaagtct
      841 gagcaatcgt tgcatggaat cctggcccga agcgacattg gctacttgca gtggaataag
      901 gacacttctg agggtgacca actctcacag gtgggcagca tgctgaagac tcctacattt
      961 cctatttggc tgtgcaacat caacggaaat tacagcatcc ttttctgcac aaataggcag
     1021 ctcttatccg actggaaaat ggagcgtgtc tttgatctgc acttttacag tggccagccc
     1081 tcacagaaga agcctgtaca tcttacaata gatacccact cccaccactg ggaaggggag
     1141 caccatgaag ataaacatgg atcaggaaga cggttttctt cactggaaat ggtgatcaga
     1201 accaaatgga gagaggctac catcaactgg aatggaacta ttcccttttt ctaaaaa
//
