LOCUS       NM_001243584            1387 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus MIF4G domain containing (Mif4gd), transcript variant
            2, mRNA.
ACCESSION   NM_001243584 NR_029442
VERSION     NM_001243584.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1387)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1387)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
REFERENCE   3  (bases 1 to 1387)
  AUTHORS   Bansal,N., Zhang,M., Bhaskar,A., Itotia,P., Lee,E.,
            Shlyakhtenko,L.S., Lam,T.T., Fritz,A., Berezney,R.,
            Lyubchenko,Y.L., Stafford,W.F. and Thapar,R.
  TITLE     Assembly of the SLIP1-SLBP complex on histone mRNA requires
            heterodimerization and sequential binding of SLBP followed by SLIP1
  JOURNAL   Biochemistry 52 (3), 520-536 (2013)
   PUBMED   23286197
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL645470.20, AK150749.1 and BQ174854.1.
            
            On Aug 18, 2011 this sequence version replaced NR_029442.1.
            
            Transcript Variant: This variant (2) differs in the 5' UTR compared
            to variant 1. Variants 1 and 2 encode the same isoform (1).
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC026740.1, AK150749.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849379, SAMN00849381
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-47                AL645470.20        11855-11901
            48-1369             AK150749.1         2-1323
            1370-1387           BQ174854.1         1-18                c
FEATURES             Location/Qualifiers
     source          1..1387
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 80.9 cM"
     gene            1..1387
                     /gene="Mif4gd"
                     /gene_synonym="1110014L05Rik; 2310075G12Rik"
                     /note="MIF4G domain containing"
                     /db_xref="GeneID:69674"
                     /db_xref="MGI:MGI:1916924"
     exon            1..185
                     /gene="Mif4gd"
                     /gene_synonym="1110014L05Rik; 2310075G12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            186..317
                     /gene="Mif4gd"
                     /gene_synonym="1110014L05Rik; 2310075G12Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             236..904
                     /gene="Mif4gd"
                     /gene_synonym="1110014L05Rik; 2310075G12Rik"
                     /note="isoform 1 is encoded by transcript variant 2; MIF4G
                     domain-containing protein"
                     /codon_start=1
                     /product="MIF4G domain-containing protein isoform 1"
                     /protein_id="NP_001230513.1"
                     /db_xref="CCDS:CCDS25643.1"
                     /db_xref="GeneID:69674"
                     /db_xref="MGI:MGI:1916924"
                     /translation="MSEASRDDYKIQSFDAETQQLLKTALKDPGAVDLERVANVIVDH
                     SLQDCVFSKEAGRMCYAIIQAESKQAGQSVFRRGLLNRLQKEYDAREQLRACSLQGWV
                     CYVTFICNIFDYLRVNNMPMMALVNPVYDCLFQLAQPESLSREEEVDCLVLQLHRVGE
                     QLEKMNGQRMDELFILIRDGFLLPTDLSSLARLLLLEMIEFRAAGWKTTPAAHKYYYS
                     EVSD"
     exon            318..427
                     /gene="Mif4gd"
                     /gene_synonym="1110014L05Rik; 2310075G12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            428..583
                     /gene="Mif4gd"
                     /gene_synonym="1110014L05Rik; 2310075G12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            584..676
                     /gene="Mif4gd"
                     /gene_synonym="1110014L05Rik; 2310075G12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            677..1372
                     /gene="Mif4gd"
                     /gene_synonym="1110014L05Rik; 2310075G12Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1350..1355
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Mif4gd"
                     /gene_synonym="1110014L05Rik; 2310075G12Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1372
                     /gene="Mif4gd"
                     /gene_synonym="1110014L05Rik; 2310075G12Rik"
                     /note="major polyA site"
ORIGIN      
        1 gccttcccga agctcctccc acgctgcccg gccggggaga gtctgaccta gttcacctga
       61 gcggggcaag ggatatggtg accccggcgc ggggtgcgac ctggcaagac caacaacttc
      121 acgcaaaacg cagggagggt ccggcccagc gctcggaggc tttcgtggtc agaaacaagg
      181 cggaggtgct gtccttagtt tcaggccagt gaaaacctgc cgggcttaga ccgtcatgag
      241 cgaggccagt agagatgatt ataaaatcca gtcttttgat gcagagacgc agcagctgct
      301 gaagaccgcg ctcaaagatc caggtgctgt ggacttagag agagtagcca acgtgattgt
      361 ggaccattct ctgcaggact gtgtattcag caaggaagca ggacgcatgt gctacgccat
      421 cattcaggca gagagtaagc aagcgggcca gagcgtcttc cgccgtgggc tcctcaaccg
      481 gctgcagaag gagtatgatg cgcgggagca gctccgagca tgctccctgc agggctgggt
      541 ctgctatgtc acctttatct gcaacatctt tgactacctg agggtgaaca acatgcccat
      601 gatggccctg gttaaccctg tctatgactg tctcttccag ctggcccagc ctgagagtct
      661 gagcagggaa gaggaggtgg actgcctggt gctgcagctg caccgggtcg gggagcagct
      721 ggagaagatg aacgggcagc gcatggatga gctctttatc ctaatccggg acggcttcct
      781 gctcccgaca gacctcagct ccctggcacg gctgctgctg ctggagatga ttgagttccg
      841 ggcagctggc tggaagacca ctcctgctgc ccacaagtat tactacagtg aggtctctga
      901 ctaagcccag gtctgcacat gccttcccgt gaccctcttt tcaagctggc accagaatcc
      961 ttgcttcagc cccttctaga cttttttgac tgctgtggtt ctgccgtctt cccttccctc
     1021 aatctggact tgtctcctgg ctgaagactg actgtcttcc tctcccctca agtcctgtta
     1081 tcttcccacc accttcctcc tgggcctgac aggggagaac caactaacaa acactgaact
     1141 gtgtagccac tggtgcaaca tgaccttggt gcctcagttt tcctgtctat aaaatgggca
     1201 attttagcca ttggtggaat gctttgggat gttaagggca agttacaaga aatggtgttt
     1261 tatatatttt atagagagac ttttgtggag gaagcctgtt tcctccagtc atgagtgact
     1321 gcctcaccag gttggggtga gggttttcta ataaatcttt tctgaaacca aaaaaaaaaa
     1381 aaaaaaa
//
