LOCUS       NM_026243               3757 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Mus musculus MGAT4 family, member C (Mgat4c), transcript variant 2,
            mRNA.
ACCESSION   NM_026243 XR_105376 XR_106555
VERSION     NM_026243.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3757)
  AUTHORS   Petitpre,C., Faure,L., Uhl,P., Fontanet,P., Filova,I.,
            Pavlinkova,G., Adameyko,I., Hadjab,S. and Lallemend,F.
  TITLE     Single-cell RNA-sequencing analysis of the developing mouse inner
            ear identifies molecular logic of auditory neuron diversification
  JOURNAL   Nat Commun 13 (1), 3878 (2022)
   PUBMED   35790771
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3757)
  AUTHORS   Ingham,N.J., Pearson,S.A., Vancollie,V.E., Rook,V., Lewis,M.A.,
            Chen,J., Buniello,A., Martelletti,E., Preite,L., Lam,C.C.,
            Weiss,F.D., Powis,Z., Suwannarat,P., Lelliott,C.J., Dawson,S.J.,
            White,J.K. and Steel,K.P.
  TITLE     Mouse screen reveals multiple new genes underlying mouse and human
            hearing loss
  JOURNAL   PLoS Biol 17 (4), e3000194 (2019)
   PUBMED   30973865
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 3757)
  AUTHORS   Bailey,P.J., Klos,J.M., Andersson,E., Karlen,M., Kallstrom,M.,
            Ponjavic,J., Muhr,J., Lenhard,B., Sandelin,A. and Ericson,J.
  TITLE     A global genomic transcriptional code associated with CNS-expressed
            genes
  JOURNAL   Exp Cell Res 312 (16), 3108-3119 (2006)
   PUBMED   16919269
REFERENCE   4  (bases 1 to 3757)
  AUTHORS   Yu,J., Farjo,R., MacNee,S.P., Baehr,W., Stambolian,D.E. and
            Swaroop,A.
  TITLE     Annotation and analysis of 10,000 expressed sequence tags from
            developing mouse eye and adult retina
  JOURNAL   Genome Biol 4 (10), R65 (2003)
   PUBMED   14519200
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK033482.1 and AC168058.4.
            
            [WARNING] On Apr 23, 2024 this sequence was replaced by
            NM_026243.5.
            
            On or before Mar 23, 2011 this sequence version replaced
            XR_105376.1, XR_106555.1, NM_026243.3.
            
            Transcript Variant: This variant (2) differs in the 5' UTR compared
            to variant 4. All three variants encode the same protein.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK033482.1, BC046987.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849380
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1758              AK033482.1         2-1759
            1759-3757           AC168058.4         192482-194480
FEATURES             Location/Qualifiers
     source          1..3757
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="10"
                     /map="10 52.92 cM"
     gene            1..3757
                     /gene="Mgat4c"
                     /gene_synonym="9130411I17Rik; GntIVh"
                     /note="MGAT4 family, member C"
                     /db_xref="GeneID:67569"
                     /db_xref="MGI:MGI:1914819"
     exon            1..208
                     /gene="Mgat4c"
                     /gene_synonym="9130411I17Rik; GntIVh"
                     /inference="alignment:Splign:2.1.0"
     exon            209..361
                     /gene="Mgat4c"
                     /gene_synonym="9130411I17Rik; GntIVh"
                     /inference="alignment:Splign:2.1.0"
     CDS             215..1651
                     /gene="Mgat4c"
                     /gene_synonym="9130411I17Rik; GntIVh"
                     /EC_number="2.4.1.145"
                     /note="N-glycosyl-oligosaccharide-glycoprotein
                     N-acetylglucosaminyltransferase IVc;
                     UDP-N-acetylglucosamine: alpha-1,3-D-mannoside
                     beta-1,4-N-acetylglucosaminyltransferase IVc; gnT-IVc;
                     mannosyl (alpha-1,3-)-glycoprotein
                     beta-1,4-N-acetylglucosaminyltransferase, isozyme C
                     (putative)"
                     /codon_start=1
                     /product="alpha-1,3-mannosyl-glycoprotein
                     4-beta-N-acetylglucosaminyltransferase C"
                     /protein_id="NP_080519.2"
                     /db_xref="CCDS:CCDS24153.1"
                     /db_xref="GeneID:67569"
                     /db_xref="MGI:MGI:1914819"
                     /translation="MLKFYQMKYIFQILDKMRCLRKRSTVSFLGVLVVFLLFMNLYIE
                     DSYVLEGDKQLIRETSTHQLNSERYVHTFKDLSNFSGTINVTYRYLAATPLQRKRYLT
                     IGLSSVKRKKGNYLLDTIKSIFEQSSYEELKEISVVVHLADFNSSWRDAMVQDITQKF
                     AHHIIAGRLMVIHAPEEYYPVLDGLKRNYNDPEDRVRFRSKQNVDYAFLLNFCANTSD
                     YYVMLEDDVRCSRNFLTAIKKVIASLEGTYWVTLEFSKLGYIGKLYHSHDLPRLAHFL
                     LMFYQEMPCDWLLTHFRGLLAQKNVIRFKPSLFQHMGYYSSYKGTENKLKDDDFEEES
                     FDIPDNPPASFYTNMNVFENYEASKAYSSVDEYFWGKSPSMGDTFVIVFENPITIKKI
                     KVNTGTEDRQNDILQHGALDVGEKLIFSKQIRQCDTYLRLGEFKNGYFEMSDVNQKIP
                     FDIHCMRICVTKTQKEWLIIRSISIWTS"
     exon            362..509
                     /gene="Mgat4c"
                     /gene_synonym="9130411I17Rik; GntIVh"
                     /inference="alignment:Splign:2.1.0"
     exon            510..3757
                     /gene="Mgat4c"
                     /gene_synonym="9130411I17Rik; GntIVh"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tcgactcctc tgtctcctgc atgagatacg tgtcagcccg gagctcagtc attaaactac
       61 ctcgtgtttg caacaagcca gtctcccgtg attccttggg tgcacacacc atctcaggac
      121 ttgagtgggg gtctcccact atggtctttc atttggagat cccaacgaga tttgtgtgac
      181 acccaggaac cccgaagacc ccttggagga gaggatgctt aaattttatc aaatgaaata
      241 tatttttcaa atattggata aaatgagatg cttgcgaaaa cggtctacag tgtcattctt
      301 gggggttctt gttgtttttc tactattcat gaacttgtac attgaagata gctatgttct
      361 ggaaggcgac aagcaactta taagggaaac atcgacacac caacttaatt ctgaacgcta
      421 tgttcacact ttcaaggatt tatcaaactt ctcaggaacc ataaatgtca cttatcgcta
      481 tctggctgcc acacctttac agagaaaacg atatctcaca attggacttt catcagtgaa
      541 acgaaaaaaa ggaaattatt tacttgacac aatcaagtca atttttgaac agtccagcta
      601 tgaagaacta aaggaaattt cagtcgtagt acatctagca gacttcaatt catcatggcg
      661 agatgccatg gtccaagaca ttacacagaa atttgcccat catattattg caggaagatt
      721 aatggttata catgctcctg aagaatatta tccagttctg gatggtctta aaagaaatta
      781 caatgaccca gaagatagag tcagatttcg ctccaagcaa aacgtagatt atgcttttct
      841 gctaaatttc tgtgccaata cttctgacta ttacgtgatg cttgaagacg atgttcggtg
      901 ttccagaaat ttcttaactg ccatcaagaa agtcatagca tccttggaag gaacatactg
      961 ggtaactctt gagttctcta aacttggcta cattggtaaa ctctatcatt ctcacgatct
     1021 cccacgtctg gcccatttct tattaatgtt ctatcaagaa atgccctgcg attggctatt
     1081 gactcatttc cgagggctgc tggctcagaa aaatgtgatt cgatttaaac cttctctctt
     1141 tcagcacatg gggtattatt catcctataa aggaacagag aataaactga aggatgatga
     1201 ctttgaagaa gagtcctttg acatccctga taacccccca gcgagtttct acaccaacat
     1261 gaatgtcttt gaaaactatg aagcaagcaa ggcttacagt agtgttgatg agtatttttg
     1321 gggaaagtca ccttcaatgg gagatacgtt cgttattgta tttgaaaatc cgattacaat
     1381 taaaaaaatt aaagtgaata ctggaacaga ggaccggcag aatgacatct tacaacatgg
     1441 agccctagat gttggggaaa aacttatttt tagcaaacaa ataagacaat gtgatactta
     1501 cttaagacta ggggaattca aaaatggata ctttgaaatg tcagatgtga atcaaaaaat
     1561 tccctttgac atacattgca tgaggatatg tgttaccaaa acacagaaag aatggctgat
     1621 aattagaagc atcagtattt ggacttccta gctaaataaa tcagtatctt gagtttctga
     1681 agcaggtctt cctgtttcag tttttgctaa cttcctcttt tgctacttta gtcttttgga
     1741 gggcaaccaa ttgctgtgcc atgtcacaag aaaaatgaat catctcggca gttttgatta
     1801 tagttttact aaacacatct ttgtattttt ttcccacttt tgaggttgaa tatcattctg
     1861 tagttaaaat tgctttcatt catacattta aatgttcata gttttaaatt tcaaccaatt
     1921 gccaaaagag tgatataaaa ggtttagcat gagaaaattc cttttaaaat aattaattaa
     1981 ttaaaaaaat cagttgccaa ctgggcacac ttatgaaaca gttgataatt tattatatgt
     2041 tcagaaagat tcttagtaag aatatatgag aatatgcaga taggttgcaa tcataaaatg
     2101 ggataatttt tcttataagt ttaggctttc actgactgat gaatttctac aattaatacc
     2161 tcctcataga agtggtatct ttacaaaaga ctatttgtgt aagtagagct gtggggaaaa
     2221 aacagattaa aaagttgtca ttcatctggt tatttatatg aaaaggaaca ttgcctatta
     2281 tttcaaaaca tttgattgag cacatattga tataaatttt tcatgagaat aagtctattt
     2341 ataacttccc ttttgaaaaa caaatagtta ataatatttg aaggttgcgt ctgtaattaa
     2401 tagagaaaga gagatggctt accgttagtc cattcgtaca aacaatttca gtaaatgtag
     2461 aaaaaaatga aattgatttt ataccttttg tattaaagct catgtgatta aaattgttgt
     2521 aatttatcat attgggggag attaaatggc tgtcttatgt gggagaaaag taatatctaa
     2581 agaaactagg ttttggtttt tgttgttgtt gttttctttt tttttaattt tttctatagt
     2641 taatttctta acaaagccaa aacaaacaat ttgtttgttg ttgttattgt tattctgatt
     2701 accagaaaaa tcctctttac tatttatgag acaattctcc cagaattgat tcttctttct
     2761 ttcttccttt ctttcttcct ttctttcttc ctccttcctt cctccttcct tcctttctct
     2821 ctctcttttt ctttctttca ttctttcttt cactccttcc tttccattat ttttctttct
     2881 tttcttcttt ccctcttctc tcatgtacgt atgtatttat ttactgttga tttgtttgtg
     2941 tctgcttgtc tgtgtatacc acctgtgtgt ggtgcctgca gaagccagaa gagggtttta
     3001 gataccctga aactcaagtt acaggacatt atgagatata tgacatgggt gctgggaaac
     3061 aaaacagtgt tctttgcaag agccgcaggc actcttaacc actgagccat cactccagtc
     3121 ccatctggta tgcctcttat tcaggtttta agtggtttgt gagattcatt tgaatttgat
     3181 aacaaagttg gtccatgaag cacgttccca tgctgtatga tgactgtaaa gtgttttaat
     3241 tcatgcttgt gtgctatatg cgtacaaata gtaatcaaac attattgggg atttttcagt
     3301 tgtctcttaa tctttccgta aaagaaattc aaggcaccag agtgttttct caatccactt
     3361 gtgtttcaga atgtactcag tggtcacatc ctagttacag tttgataagc aaccagatga
     3421 agtggtttgt aatgaagaga aatagagaat gtttcatatg tttgtgttcc tggaaaacaa
     3481 tcaaattcag gttaacatat ttatatggtg acactttcat gcacacataa atatgtgtgt
     3541 atgtctgtgt gtgtgtgtgt ataatgtgtg cttgtgtgtg tagtgtaaag actatattta
     3601 ttatactaaa aaaatgaaag agaaaaaaag gagttttgtg tctggtattc tttccaatgt
     3661 aaagtacaat cttattagag tctaaaagag attagactgt ttttatttta ttaattctgt
     3721 caaaatcaat taaattagaa aatcagattg agtgaaa
//
