LOCUS       NM_001114662            3842 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus major facilitator superfamily domain containing 4A
            (Mfsd4a), transcript variant b, mRNA.
ACCESSION   NM_001114662
VERSION     NM_001114662.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3842)
  AUTHORS   Kerr,N., Pintzas,A., Holmes,F., Hobson,S.A., Pope,R., Wallace,M.,
            Wasylyk,C., Wasylyk,B. and Wynick,D.
  TITLE     The expression of ELK transcription factors in adult DRG: Novel
            isoforms, antisense transcripts and upregulation by nerve damage
  JOURNAL   Mol Cell Neurosci 44 (2), 165-177 (2010)
   PUBMED   20304071
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK048692.1, AK162495.1, AK085484.1, AC107837.11 and AI642828.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The extent of this transcript is
            supported by transcript alignments and orthologous data.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR9219382.185237.1,
                                           SRR17784651.204119.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-97                AK048692.1         2-98
            98-1307             AK162495.1         2-1211
            1308-2485           AK085484.1         724-1901
            2486-3653           AC107837.11        125228-126395       c
            3654-3842           AI642828.1         1-189               c
FEATURES             Location/Qualifiers
     source          1..3842
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 57.24 cM"
     gene            1..3842
                     /gene="Mfsd4a"
                     /gene_synonym="A230072B04; A930031D07Rik; Mfsd4"
                     /note="major facilitator superfamily domain containing 4A"
                     /db_xref="GeneID:213006"
                     /db_xref="MGI:MGI:2442786"
     exon            1..400
                     /gene="Mfsd4a"
                     /gene_synonym="A230072B04; A930031D07Rik; Mfsd4"
                     /inference="alignment:Splign:2.1.0"
     CDS             171..1703
                     /gene="Mfsd4a"
                     /gene_synonym="A230072B04; A930031D07Rik; Mfsd4"
                     /note="isoform b is encoded by transcript variant b; major
                     facilitator superfamily domain-containing protein 4; major
                     facilitator superfamily domain containing 4; major
                     facilitator superfamily domain-containing protein 4A"
                     /codon_start=1
                     /product="major facilitator superfamily domain-containing
                     protein 4A isoform b"
                     /protein_id="NP_001108134.1"
                     /db_xref="CCDS:CCDS48357.1"
                     /db_xref="GeneID:213006"
                     /db_xref="MGI:MGI:2442786"
                     /translation="MGCDGRVSELLRRNLQPTLTYWSVFFSFGLCIAFLGPTLLDLRC
                     QTHSSLPQISWVFFSQQLCLLLGSALGGVFKRTLAQSLWALFTSTLVISLVFAVIPFC
                     HDVKVLASVIALAGLAMGCIDTVANMQLVRIYQKDSAFFLQVLHFFVGLGALLSPLIA
                     DPFLSEANCFPANNTANATSRSHGSRVLSQHHAAAQPWINQTIPRLPPKEVTENHVSY
                     AFWIMALINLPVPLAVLFLLSKERLLTCAQRKPLLLSADELALETRPAEKEDTSSLAP
                     KFQPHSGQEDLFSCCQRKNFRGAPCSFFAIHITAALVLFMTDGMMGAYSAFVYSYAVE
                     KPLSIGHKSAGYLPSLFWGFITLGRFISIPVSSRMRPATMVFINVVGVVVTFLMLLIF
                     SYNVIFLFVGTASLGLFLSSTFPSMLAYTEDILQYKGCATTVLVTGAGIGEMVLQMLV
                     GLIFQAQGSYSFLVCGVIFGCLAFIFYILLLFFHRIHPELSSVLTQDKALGVENPECY
                     QR"
     exon            401..599
                     /gene="Mfsd4a"
                     /gene_synonym="A230072B04; A930031D07Rik; Mfsd4"
                     /inference="alignment:Splign:2.1.0"
     exon            600..851
                     /gene="Mfsd4a"
                     /gene_synonym="A230072B04; A930031D07Rik; Mfsd4"
                     /inference="alignment:Splign:2.1.0"
     exon            852..1017
                     /gene="Mfsd4a"
                     /gene_synonym="A230072B04; A930031D07Rik; Mfsd4"
                     /inference="alignment:Splign:2.1.0"
     exon            1018..1133
                     /gene="Mfsd4a"
                     /gene_synonym="A230072B04; A930031D07Rik; Mfsd4"
                     /inference="alignment:Splign:2.1.0"
     exon            1134..1307
                     /gene="Mfsd4a"
                     /gene_synonym="A230072B04; A930031D07Rik; Mfsd4"
                     /inference="alignment:Splign:2.1.0"
     exon            1308..1455
                     /gene="Mfsd4a"
                     /gene_synonym="A230072B04; A930031D07Rik; Mfsd4"
                     /inference="alignment:Splign:2.1.0"
     exon            1456..1526
                     /gene="Mfsd4a"
                     /gene_synonym="A230072B04; A930031D07Rik; Mfsd4"
                     /inference="alignment:Splign:2.1.0"
     exon            1527..1647
                     /gene="Mfsd4a"
                     /gene_synonym="A230072B04; A930031D07Rik; Mfsd4"
                     /inference="alignment:Splign:2.1.0"
     exon            1648..3838
                     /gene="Mfsd4a"
                     /gene_synonym="A230072B04; A930031D07Rik; Mfsd4"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3819..3824
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Mfsd4a"
                     /gene_synonym="A230072B04; A930031D07Rik; Mfsd4"
                     /note="hexamer: AATAAA"
     polyA_site      3838
                     /gene="Mfsd4a"
                     /gene_synonym="A230072B04; A930031D07Rik; Mfsd4"
                     /note="major polyA site"
ORIGIN      
        1 cccggcggcg ggacacgtgc gtccgcgacg ccccggacct ccaggcgtcc ccgcgctggc
       61 cgagggcggg gcagccgcgc ggcgctcccc tcctctcctc tcctccccgc ccggcctccg
      121 gttggccgcg gcactcggcc ctgggctcgc tgcgagctgc cggccgagcc atgggctgcg
      181 acggccgggt gtctgagctg ctccgccgca acctacagcc cacgctcacc tactggagcg
      241 tcttcttcag cttcggcctg tgcatcgcct tcctggggcc cacgcttctg gacctgcgct
      301 gccagacgca cagctcgttg ccccagatct cctgggtctt cttctcgcag cagctctgcc
      361 tcctgctggg cagcgccctc gggggtgtct tcaagaggac cctggcccag tcgttatggg
      421 ccctcttcac ctctaccctg gtcatctccc tggtttttgc tgtcatcccc ttctgccatg
      481 acgtgaaggt attggcctcg gtcatagcgc tggcgggcct ggccatgggc tgcatcgaca
      541 ccgtggccaa catgcagttg gtgaggatat accagaagga ctcagccttc ttccttcagg
      601 tccttcattt cttcgtgggc cttggtgctc tgctgagccc cctgattgcg gaccccttcc
      661 tgtcagaggc caactgcttt cctgctaata acacagccaa tgccacctcc agaagccatg
      721 gatcccgggt cctgagccaa catcacgcag cagcccagcc ttggataaac cagacgatcc
      781 ccaggctgcc cccaaaggag gtgaccgaga accacgtatc ctatgccttc tggatcatgg
      841 ctctcatcaa tctcccagtg cccctggctg ttctgttcct gctgtccaag gagcggctgc
      901 tgacctgcgc tcagaggaag ccactgctcc tgtctgcgga tgagcttgca ctggagaccc
      961 ggcctgctga gaaggaagac acctcctcac ttgcccccaa gtttcagcca cactcagggc
     1021 aggaggacct gttcagctgc tgccagagga agaacttccg gggagccccg tgctctttct
     1081 tcgccatcca catcacggca gctctggtcc tgttcatgac agacgggatg atgggcgctt
     1141 attcggcctt tgtgtacagc tatgctgtgg agaagccgct ctctattgga cacaagtcag
     1201 ctggttacct ccctagcctc ttctggggtt tcatcactct gggcaggttc atctccatcc
     1261 cagtctcctc aagaatgagg ccagccacca tggtgttcat caatgtggtg ggagtggtgg
     1321 tgaccttcct gatgctgctt atcttctcct acaatgtcat cttcctgttt gtggggaccg
     1381 caagcctggg gctgtttctc agtagcacct tccccagtat gctggcctac accgaggaca
     1441 tcctccagta taaaggttgt gcgaccacag tgctggtgac tggggcaggc attggcgaga
     1501 tggtcctgca gatgctggtt ggcttgatct ttcaggccca gggcagttac agtttcctgg
     1561 tctgtggtgt gatctttggc tgcctggctt ttatcttcta catcttgctc ctgtttttcc
     1621 acaggataca ccctgaactc tcatcagttc ttacccaaga caaagccctt ggtgtggaga
     1681 accctgagtg ctaccagagg tgaagagctg aagagctcag ctcctgagcc acagggtgac
     1741 cagactgaca caggaagcca gggttgcaca ggaggctgct cttgcttgtg tcttccttcc
     1801 ctgagtcttc cctggacaaa tcgagcacct gcctgacact ttagttatct tcctctctgg
     1861 tccggacttg ttgtcctgac aaccagacag gaggatgaaa gacagcccgc acacacctct
     1921 ccacacacca ccccacgcat gggctaaact ctgggtttga gatcacgttt agttgaagtt
     1981 tgaaaaacat gctaaaatcc taagtcatta accactgcta ggtgtagata tattttaaat
     2041 caatcaagcc cctctggcat gttaaaaaag atttatgtgt tcttcactta cccatggtcc
     2101 caagtccctc acatccgtcc tgcagaaatc agtttatttg tgtcctaaga caacaaagga
     2161 aatgttgaat cttgctttga gaccctagtc agtgttgcat tgggctaact cagacaagct
     2221 ttagaaagtt gactgttaaa ttttcatttt gagagctagt aggcatgaca aagacttaaa
     2281 ttattatttt tattattatt gagatggtat ttctctgggt agccccagct gtcccagaac
     2341 acattctgta gaccaggcta tcctggaatt cactctatag accaggctag cctcaaactc
     2401 acaaagatcc tcctgcctct gcctctcaag tgctgggatt aaaggtgtgt actgccacta
     2461 cctagcttta aaaaaaaaaa aaaaattgta actaaacaaa ggtaattctc caaacctcac
     2521 tttctaattt tacatggcag atgctcctga gcccaagaag cagctcagat gctgctcagg
     2581 agtgtccatg gcaccaaggt ggtgacattt ctgtgacaga atactgctgg gctcctcctc
     2641 tcagatctct gtgacagcct gctggtagtc caaggtcagc catggcccag aaatggtgaa
     2701 agccgtgccc ctgggaacag atgggtttcc agcgtctttc tgctaacgag caatgctagt
     2761 tggttcagaa agtgcaggga gaatgaaatg gacagtctgt tgttctttac tgagatcctc
     2821 aaggtacaga agaatttttt ttaaaaaaat agctcatttg gtattttata ccttttatag
     2881 atgaaaattt tatactgtgt caaggccctc cctccctccc atataaatct aggactacta
     2941 tataattcaa gccatgcagt atacagagag cagtgtcagt atgcagaaac cagtgtctgt
     3001 caggagtgcc ctcttctata cagaaggtag gttagtaatc cagagaatac aagaaggcgg
     3061 ctcaccagcc cgggcagggc tgggtgcaag gcttctggca tcagcgacat gacatgattt
     3121 gtctctggga agtctctagg aggaacaaat gtcctgttac agtcattggt ttaatctgta
     3181 cattctctgt gcatatacat gtgttcatgt gagcatggac tcatggtccc aagggctgta
     3241 gttcacacac tagacaccag cagagcagag gtgggccagg ttatcagcct tctagctgtg
     3301 actccagaag ccccccatcc cccacctcca gccttgcttg tttttaccag tatgatggca
     3361 tttctaaaag caccctacct cacaggaatt ctgagagaac tgagagtgtg tggagcatct
     3421 gctgcatgcc ctacatggga cctgccttcc aaatgttcat ggttttactt ctattctttg
     3481 taacacctca tacgcagctt agacgtcatc tccatttggt acaaacttta agtcaaattt
     3541 aactttgaaa cgccgatggc ctaagcaaat ccttttaact atatttataa attcattgaa
     3601 aagtacctca tactagccat attaaaatct agctgggcaa tctaactatg gtgactgacc
     3661 tgggcaaaga gaaagtggtt gtatttttct tgtagttttt ttttcaagaa aacatccttt
     3721 ttatacagat ctagaaagaa gaatcactgc ttatacctac attggtgatg attgatgtgt
     3781 taatatagaa aactcaaaag aatctcatac tttcctaaaa taaaatattt taaacctaaa
     3841 aa
//
