LOCUS       NM_029186               2280 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus major facilitator superfamily domain containing 13a
            (Mfsd13a), mRNA.
ACCESSION   NM_029186
VERSION     NM_029186.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2280)
  AUTHORS   Kooistra,M.K., Leduc,R.Y., Dawe,C.E., Fairbridge,N.A.,
            Rasmussen,J., Man,J.H., Bujold,M., Juriloff,D., King-Jones,K. and
            McDermid,H.E.
  TITLE     Strain-specific modifier genes of Cecr2-associated exencephaly in
            mice: genetic analysis and identification of differentially
            expressed candidate genes
  JOURNAL   Physiol Genomics 44 (1), 35-46 (2012)
   PUBMED   22045912
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC114539.8.
            
            On Sep 6, 2006 this sequence version replaced NM_029186.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC058746.1, AK151797.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-105               AC114539.8         126544-126648
            106-348             AC114539.8         135975-136217
            349-431             AC114539.8         136874-136956
            432-884             AC114539.8         137373-137825
            885-1008            AC114539.8         137930-138053
            1009-1105           AC114539.8         138901-138997
            1106-1277           AC114539.8         141600-141771
            1278-1471           AC114539.8         141846-142039
            1472-2280           AC114539.8         144110-144918
FEATURES             Location/Qualifiers
     source          1..2280
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="19"
                     /map="19 38.82 cM"
     gene            1..2280
                     /gene="Mfsd13a"
                     /gene_synonym="4930449A08Rik; 4930538D17Rik; Tmem180"
                     /note="major facilitator superfamily domain containing
                     13a"
                     /db_xref="GeneID:75146"
                     /db_xref="MGI:MGI:1922396"
     exon            1..105
                     /gene="Mfsd13a"
                     /gene_synonym="4930449A08Rik; 4930538D17Rik; Tmem180"
                     /inference="alignment:Splign:2.1.0"
     exon            106..348
                     /gene="Mfsd13a"
                     /gene_synonym="4930449A08Rik; 4930538D17Rik; Tmem180"
                     /inference="alignment:Splign:2.1.0"
     CDS             181..1740
                     /gene="Mfsd13a"
                     /gene_synonym="4930449A08Rik; 4930538D17Rik; Tmem180"
                     /note="major facilitator superfamily domain-containing
                     13A"
                     /codon_start=1
                     /product="transmembrane protein 180"
                     /protein_id="NP_083462.2"
                     /db_xref="CCDS:CCDS29877.1"
                     /db_xref="GeneID:75146"
                     /db_xref="MGI:MGI:1922396"
                     /translation="MGLDWPQAWLLGLPIAVVYGSLALFTSILHNVFLLYYVDTFVSV
                     YKINKVSFWVGETVFLLWNSFNDPLFGWLSDRQLLSSQPRSGAGLSSRDVVLTRVRAL
                     GWHGPLLALSFLAFWVPWAPAGLQFLLCLCLYDGFLTLVDLHHHALLADLALSSHDRT
                     HLNFYCSLFSAAGSLSVFASYAFWNKEDFSSFRAFCVVLAAGSGLGFLGTTQLLKRQI
                     EATRRDRGCPGLDLDGGVCEEEPPVGGEEAGNITLGQYLRQLARHQNFLWFVGMDLVQ
                     VFHCHFNSNFFPLFLEHLLSDHISLSTGSFLLGISYVAPHLNNLYFLPLCRRWGVYAV
                     VRGLFLLKLSLSLLMLLAGPDHPGLLCFFIASNRVFTEGTCKLLTLVVTDLVDEDLVL
                     NHRKQAASALLFGMVALVTKPGQTFAPLLGTWLLCFYTGHDLFQQSPMTPVGSVRPWP
                     ELPAPAPAPAQAPTLRQGCFYLLVFVPITCALLQLFTWSQFTLHGRRLRTVKAQRQNL
                     AQIHTLNIKMV"
     exon            349..431
                     /gene="Mfsd13a"
                     /gene_synonym="4930449A08Rik; 4930538D17Rik; Tmem180"
                     /inference="alignment:Splign:2.1.0"
     exon            432..884
                     /gene="Mfsd13a"
                     /gene_synonym="4930449A08Rik; 4930538D17Rik; Tmem180"
                     /inference="alignment:Splign:2.1.0"
     exon            885..1008
                     /gene="Mfsd13a"
                     /gene_synonym="4930449A08Rik; 4930538D17Rik; Tmem180"
                     /inference="alignment:Splign:2.1.0"
     exon            1009..1105
                     /gene="Mfsd13a"
                     /gene_synonym="4930449A08Rik; 4930538D17Rik; Tmem180"
                     /inference="alignment:Splign:2.1.0"
     exon            1106..1277
                     /gene="Mfsd13a"
                     /gene_synonym="4930449A08Rik; 4930538D17Rik; Tmem180"
                     /inference="alignment:Splign:2.1.0"
     exon            1278..1471
                     /gene="Mfsd13a"
                     /gene_synonym="4930449A08Rik; 4930538D17Rik; Tmem180"
                     /inference="alignment:Splign:2.1.0"
     exon            1472..2280
                     /gene="Mfsd13a"
                     /gene_synonym="4930449A08Rik; 4930538D17Rik; Tmem180"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2261..2266
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Mfsd13a"
                     /gene_synonym="4930449A08Rik; 4930538D17Rik; Tmem180"
                     /note="hexamer: AGTAAA"
     polyA_site      2280
                     /gene="Mfsd13a"
                     /gene_synonym="4930449A08Rik; 4930538D17Rik; Tmem180"
                     /note="major polyA site"
ORIGIN      
        1 ggagggagag actggggaag cccaaggctg ctagcgcgca ggcgcactgg ctggcacctg
       61 gctcccccgc tgccgcggaa ttaggcatcg tctgccagga ttgcgagacg aggatggtcg
      121 gacaggcaat gtctgtgagt cctccgcagt gcccctgggg ctgaggctcc accagcagcc
      181 atggggctgg actggcccca agcctggcta ttgggcctgc ccatagctgt ggtgtacggc
      241 tcgttggccc tcttcacctc catcctgcac aatgtgttcc tgctgtacta cgtggacacc
      301 ttcgtctcag tgtataagat caataaagtg tccttctggg ttggagagac tgtatttctc
      361 ctctggaaca gcttcaatga ccccctcttc ggctggctca gtgatcgtca gctcctcagc
      421 tcccagcccc ggtcaggagc agggctctcc tccagagacg tggtgctgac ccgggtccgg
      481 gctctgggct ggcatgggcc gctgctggca ctgtccttcc tggcattctg ggtgccctgg
      541 gcccctgctg gcttgcaatt cttactgtgc ctgtgccttt atgatggctt cctgacgctc
      601 gtggacctcc accaccatgc cttgctggcc gacctggcgc tctcatccca cgaccgcacc
      661 cacctcaact tttactgctc cctcttcagt gcagctggct ccttgtcagt cttcgcctcc
      721 tacgcctttt ggaacaagga ggacttctcc tccttccgtg ccttctgtgt ggtactagct
      781 gctggctctg ggctgggctt tctgggaacc acacaattat tgaagcggca gattgaagcg
      841 accagaaggg acaggggttg cccgggcctg gacctggatg gtggcgtgtg tgaagaggag
      901 ccgccagtgg gtggtgagga agcaggcaac atcaccttgg gccagtacct ccggcaactg
      961 gcacgccacc aaaacttcct gtggttcgtg ggcatggacc tggtacaggt gttccactgt
     1021 cacttcaaca gtaacttctt ccccctcttc ctggaacact tgctgtctga ccacatctcc
     1081 ctgtccactg gctccttcct gttgggcatc tcctatgtcg ctcctcatct caacaacctg
     1141 tacttcctgc ccctgtgccg gcgctggggt gtctatgcag tggtgcgggg gctcttcctg
     1201 ctcaagctga gccttagcct cctcatgctg ttggctggcc cagaccaccc tggcctgctt
     1261 tgcttcttca ttgccagcaa ccgtgtcttc actgagggta cctgtaagct gctgacactg
     1321 gtggtcactg acctggtgga tgaggacctg gtactgaacc atcggaagca ggcagcctcg
     1381 gcgctcctct ttggcatggt tgccctggtg accaagcctg gccagacctt tgccccactg
     1441 ctgggcacct ggcttctctg cttctacaca ggtcacgacc tttttcagca atccccaatg
     1501 acccctgtgg ggagcgttcg gccatggcca gagctgccag ccccagcccc cgcccccgcg
     1561 caggctccca cactccgcca gggctgcttc tacctgctgg tgtttgtccc catcacctgt
     1621 gcgctgctgc agctcttcac ctggtcccag ttcacgctgc atgggagacg cctacgcacg
     1681 gtcaaggccc agcgtcagaa cctggcccag atccatactc tgaacattaa gatggtgtga
     1741 gaggcccatc aggaccactg tgctgagatc cttggcctag tcccagcagt agcctctcgt
     1801 gctgaccagc atcctgtttc ctcacctctg ggttcagcct agagaacgga tggtgaagcc
     1861 gaaccaggag catcaccaag gactgcccct tctttagtca tgtgactcag cttgtgcaag
     1921 ggctgggccc tgtgtgctca gggacctgcg actcctgtgg ggtagcaaga aaagaggacc
     1981 agaaagggta gggctgagta cggtgcccag gaactgcctg ggacctgtag ctggggctgg
     2041 ccatttggtg ggctcgggag tttctgaagc tgtgacgccc ctcttgccca cgcagaagtc
     2101 gactgaaagt gccactcgcc tctcctccta gtcgtttctc tcagagggtt ctctgcttct
     2161 gctatgcttg aagtggcatg ccctctgctg tagccccctc ccgcccgcgc ccccaaagcc
     2221 ctgcaggcct ctaaactcta aagaggttca tctcatctca agtaaagcca gtcattccaa
//
