LOCUS       NM_001412501            1913 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus major facilitator superfamily domain containing 10
            (Mfsd10), transcript variant 5, mRNA.
ACCESSION   NM_001412501 XM_017321084
VERSION     NM_001412501.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1913)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1913)
  AUTHORS   Bagchi,S., Perland,E., Hosseini,K., Lundgren,J., Al-Walai,N.,
            Kheder,S. and Fredriksson,R.
  TITLE     Probable role for major facilitator superfamily domain containing 6
            (MFSD6) in the brain during variable energy consumption
  JOURNAL   Int J Neurosci 130 (5), 476-489 (2020)
   PUBMED   31906755
  REMARK    GeneRIF: Probable role for major facilitator superfamily domain
            containing 6 (MFSD6) in the brain during variable energy
            consumption.
REFERENCE   3  (bases 1 to 1913)
  AUTHORS   Cheng,L.C., Baboo,S., Lindsay,C., Brusman,L.,
            Martinez-Bartolome,S., Tapia,O., Zhang,X., Yates,J.R. 3rd and
            Gerace,L.
  TITLE     Identification of new transmembrane proteins concentrated at the
            nuclear envelope using organellar proteomics of mesenchymal cells
  JOURNAL   Nucleus 10 (1), 126-143 (2019)
   PUBMED   31142202
REFERENCE   4  (bases 1 to 1913)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
REFERENCE   5  (bases 1 to 1913)
  AUTHORS   Ushijima,H., Hiasa,M., Namba,T., Hwang,H.J., Hoshino,T., Mima,S.,
            Tsuchiya,T., Moriyama,Y. and Mizushima,T.
  TITLE     Expression and function of TETRAN, a new type of membrane
            transporter
  JOURNAL   Biochem Biophys Res Commun 374 (2), 325-330 (2008)
   PUBMED   18638446
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC115695.11.
            
            On Oct 3, 2022 this sequence version replaced XM_017321084.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR13422597.631205.1,
                                           SRR17253014.3553018.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-232               AC115695.11        2850-3081
            233-464             AC115695.11        3183-3414
            465-561             AC115695.11        3502-3598
            562-665             AC115695.11        3884-3987
            666-824             AC115695.11        4241-4399
            825-986             AC115695.11        4477-4638
            987-1095            AC115695.11        4849-4957
            1096-1207           AC115695.11        5046-5157
            1208-1316           AC115695.11        5309-5417
            1317-1407           AC115695.11        5495-5585
            1408-1455           AC115695.11        5668-5715
            1456-1545           AC115695.11        5788-5877
            1546-1913           AC115695.11        5994-6361
FEATURES             Location/Qualifiers
     source          1..1913
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 17.9 cM"
     gene            1..1913
                     /gene="Mfsd10"
                     /gene_synonym="0610009O03Rik; Tetran"
                     /note="major facilitator superfamily domain containing 10"
                     /db_xref="GeneID:68294"
                     /db_xref="MGI:MGI:1915544"
     exon            1..232
                     /gene="Mfsd10"
                     /gene_synonym="0610009O03Rik; Tetran"
                     /inference="alignment:Splign:2.1.0"
     exon            233..464
                     /gene="Mfsd10"
                     /gene_synonym="0610009O03Rik; Tetran"
                     /inference="alignment:Splign:2.1.0"
     CDS             291..1661
                     /gene="Mfsd10"
                     /gene_synonym="0610009O03Rik; Tetran"
                     /note="isoform 1 is encoded by transcript variant 5;
                     tetracycline transporter-like protein; major facilitator
                     superfamily domain-containing protein 10"
                     /codon_start=1
                     /product="major facilitator superfamily domain-containing
                     protein 10 isoform 1"
                     /protein_id="NP_001399430.1"
                     /db_xref="GeneID:68294"
                     /db_xref="MGI:MGI:1915544"
                     /translation="MGWAGDAGCTPRPPIRPRPASERRVIIVLFLGLLLDLLAFTLLL
                     PLLPGLLERHGREQDPLYGSWQRGVDWFASAIGMPAEKRYNSVLFGGLIGSAFSLLQF
                     FSAPLTGAASDYLGRRPVMMLSLTGLAISYAVWATSRSFKAFLASRVIGGISKGNVNL
                     STAIVADLGSPPTRSQGMAVIGVAFSLAFTLGPMLGAFLSVEMVPWISLLFAISDMLF
                     IFCFLPETLPQEKRASSVTLGFHTAAHLLSPLALLRFAAVTHSQDPPAEHRLRNLRRL
                     GLVYFLYLFLFSGLEYTLSFLAHQRFQFSSLQQGKMFFFIGLTMATIQGTYARRISPG
                     KEAAAVTRAMLLLVPAFLLIGWAHSLPTLGLGLMLYSFAAAVVVPGLSTMVSSYGSPG
                     QKGTIMGILRSLGALGRALGPVVAASVYWLTGAQVCFTVCSALFLLPFLLLWKLKHPA
                     ETSKEE"
     exon            465..561
                     /gene="Mfsd10"
                     /gene_synonym="0610009O03Rik; Tetran"
                     /inference="alignment:Splign:2.1.0"
     exon            562..665
                     /gene="Mfsd10"
                     /gene_synonym="0610009O03Rik; Tetran"
                     /inference="alignment:Splign:2.1.0"
     exon            666..824
                     /gene="Mfsd10"
                     /gene_synonym="0610009O03Rik; Tetran"
                     /inference="alignment:Splign:2.1.0"
     exon            825..986
                     /gene="Mfsd10"
                     /gene_synonym="0610009O03Rik; Tetran"
                     /inference="alignment:Splign:2.1.0"
     exon            987..1095
                     /gene="Mfsd10"
                     /gene_synonym="0610009O03Rik; Tetran"
                     /inference="alignment:Splign:2.1.0"
     exon            1096..1207
                     /gene="Mfsd10"
                     /gene_synonym="0610009O03Rik; Tetran"
                     /inference="alignment:Splign:2.1.0"
     exon            1208..1316
                     /gene="Mfsd10"
                     /gene_synonym="0610009O03Rik; Tetran"
                     /inference="alignment:Splign:2.1.0"
     exon            1317..1407
                     /gene="Mfsd10"
                     /gene_synonym="0610009O03Rik; Tetran"
                     /inference="alignment:Splign:2.1.0"
     exon            1408..1455
                     /gene="Mfsd10"
                     /gene_synonym="0610009O03Rik; Tetran"
                     /inference="alignment:Splign:2.1.0"
     exon            1456..1545
                     /gene="Mfsd10"
                     /gene_synonym="0610009O03Rik; Tetran"
                     /inference="alignment:Splign:2.1.0"
     exon            1546..1913
                     /gene="Mfsd10"
                     /gene_synonym="0610009O03Rik; Tetran"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1890..1895
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Mfsd10"
                     /gene_synonym="0610009O03Rik; Tetran"
                     /note="hexamer: AATAAA"
     polyA_site      1913
                     /gene="Mfsd10"
                     /gene_synonym="0610009O03Rik; Tetran"
                     /note="major polyA site"
ORIGIN      
        1 gttcatccac ccgtttgtcc ccgcctggag ctgcggcacg tgtgcacagg tcccagctgg
       61 gtaggtggga agcaaaggtt tcgatatcgt gtgaggaggc cgaagtggta cacgaacagg
      121 agctcagggc gcctacgact ccccaaccag ggattcccgt cttctccccg ttacccgctt
      181 cacaacaggg ggcgccctga ccactgcggc cctgagctta ctgctgccct aggtaaacgg
      241 ggccgtcatc accacaccct ccttccccca gcagggtcgg agcttccacc atgggctggg
      301 caggggatgc gggctgtacg cctcgtccgc ctatacggcc tcggcccgcg tccgagcgtc
      361 gcgtgatcat cgtgctcttc ctcggcctgc tactcgacct cctggcgttc acgctgttgc
      421 tgcctctgct gcctgggctg ctggagagac acggccgcga acaagacccc ctctatggct
      481 cctggcagcg tggggtagac tggtttgctt cagccatcgg gatgccagcg gaaaagaggt
      541 acaacagtgt cctgttcgga ggtctcatcg gctcggcctt ctccctcctg cagttcttct
      601 ccgcaccact cacaggagct gcctctgatt acctggggag gcgcccagtg atgatgttgt
      661 ccctgacagg tttggccatc tcctatgcag tgtgggctac ctctcggagc tttaaggcct
      721 tcttggcctc cagggtgatc ggaggcatca gcaaggggaa cgttaacctc tccacagcca
      781 ttgtcgctga cctgggctca cctccaaccc gcagccaagg catggcagtc atcggggtag
      841 ccttctcctt ggcctttact ctgggtccca tgctgggagc attcctgtct gtggaaatgg
      901 tgccctggat cagcctactt tttgccatct ccgacatgtt gttcatcttc tgtttcttgc
      961 cagagacact gccccaggaa aagcgggcat cttctgtcac cctgggcttc cacactgctg
     1021 cccacctgct cagccccctg gccctgcttc gctttgcggc tgtcactcac agtcaggacc
     1081 cgcctgctga gcacagactc agaaacttac gccgtttggg tcttgtctac ttcctctacc
     1141 tcttcctgtt ctcaggcctg gagtacacac tcagcttcct ggcacatcag cgcttccagt
     1201 tcagcagcct gcagcagggc aagatgtttt tcttcatcgg cctcaccatg gccaccatac
     1261 agggcaccta cgcccggcgg atcagccctg gcaaggaagc tgcagctgtg acgagggcaa
     1321 tgctgctgct agtaccagcc ttcctcttaa ttggctgggc acactcgctg cctacgttgg
     1381 gcttgggact gatgctctac tcctttgctg ctgctgttgt ggtgcctggt ctgtccacca
     1441 tggtctccag ttatggttct ccagggcaaa aaggcacaat catgggcata ctgcggagcc
     1501 taggcgccct aggcagggcg ttggggccgg tggtggctgc ctcagtgtac tggctgactg
     1561 gggcccaggt ctgcttcact gtgtgctcgg ccctctttct gctccccttc ctactcctgt
     1621 ggaagctgaa gcatccagca gagacttcca aggaggagta gctgagctgc cacacccaac
     1681 cccagctgtc tggctgccag gtgggaacct gggcccagac cactcagctc ctagcacact
     1741 cctcccaccg ggcccaggga ggctcgccac gcccctcctc tctctggatg gcaacccagc
     1801 aggaagcctg ggcagctaca cccttttctt actccaaaac cttttaggct tccagaattt
     1861 tttttatatc ttattcttct gaatgaccaa ataaagcagc tattttgtac caa
//
