LOCUS       NM_027756               6372 bp    mRNA    linear   ROD 06-JUN-2024
DEFINITION  Mus musculus microfibrillar-associated protein 3-like (Mfap3l),
            transcript variant 1, mRNA.
ACCESSION   NM_027756 XM_974921
VERSION     NM_027756.5
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 6372)
  AUTHORS   Okazaki,N., Kikuno,R., Ohara,R., Inamoto,S., Aizawa,H., Yuasa,S.,
            Nakajima,D., Nagase,T., Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of KIAA
            gene: II. The complete nucleotide sequences of 400 mouse
            KIAA-homologous cDNAs identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 10 (1), 35-48 (2003)
   PUBMED   12693553
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC121923.3 and CJ132157.1.
            
            On Jun 20, 2014 this sequence version replaced NM_027756.4.
            
            Transcript Variant: This variant (1) and variants 2 and 3 encode
            the same isoform (a).
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC095950.1, SRR10223970.10593.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-50                AC121923.3         68846-68895         c
            51-666              CJ132157.1         1-616
            667-6372            AC121923.3         24989-30694         c
FEATURES             Location/Qualifiers
     source          1..6372
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 30.86 cM"
     gene            1..6372
                     /gene="Mfap3l"
                     /gene_synonym="4933428A15Rik; 5430405D20Rik; mKIAA0626;
                     NYD-sp9"
                     /note="microfibrillar-associated protein 3-like"
                     /db_xref="GeneID:71306"
                     /db_xref="MGI:MGI:1918556"
     exon            1..234
                     /gene="Mfap3l"
                     /gene_synonym="4933428A15Rik; 5430405D20Rik; mKIAA0626;
                     NYD-sp9"
                     /inference="alignment:Splign:2.1.0"
     exon            235..664
                     /gene="Mfap3l"
                     /gene_synonym="4933428A15Rik; 5430405D20Rik; mKIAA0626;
                     NYD-sp9"
                     /inference="alignment:Splign:2.1.0"
     CDS             367..1596
                     /gene="Mfap3l"
                     /gene_synonym="4933428A15Rik; 5430405D20Rik; mKIAA0626;
                     NYD-sp9"
                     /note="isoform a precursor is encoded by transcript
                     variant 1"
                     /codon_start=1
                     /product="microfibrillar-associated protein 3-like isoform
                     a precursor"
                     /protein_id="NP_082032.1"
                     /db_xref="CCDS:CCDS22321.1"
                     /db_xref="GeneID:71306"
                     /db_xref="MGI:MGI:1918556"
                     /translation="MGLQKSHLTVCLPPSVPFLILVSTLATAKSVTNSTLNGTDVVLG
                     SVPVIIARTDHIIVKEGSSALINCSAYGFPDLEFKWYNSVGKLLKEMDDEKEKGGGKW
                     QMLDGGLLNITKVSFSDRGKYTCVASNIYGTINNTVTLRVIFTSGDMGVYYMVVCLVA
                     FTIVMILNITRLCMMSSHLKKTEKAINEFFRTEGAEKLQKAFEIAKRIPIITSAKTLE
                     LAKVTQFKTMEFARYIEELARSVPLPPLIMNCRTIMEEIMEVVGLEEQGQNFVRHTPE
                     GQEAPDRDEVYTIPNSLKRSESPTADSDASSLHEQPQQIAIKVSVHPQSKRDHVDDQE
                     GGHFEVKDEEETEPSEEHSPETAEPSTDITTTELTSEETSPVEAPERGLPPAHLETTE
                     PAVTCDRNTCIIYESHV"
     exon            665..6372
                     /gene="Mfap3l"
                     /gene_synonym="4933428A15Rik; 5430405D20Rik; mKIAA0626;
                     NYD-sp9"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1974..1979
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Mfap3l"
                     /gene_synonym="4933428A15Rik; 5430405D20Rik; mKIAA0626;
                     NYD-sp9"
                     /note="hexamer: ATTACA"
     polyA_site      2004
                     /gene="Mfap3l"
                     /gene_synonym="4933428A15Rik; 5430405D20Rik; mKIAA0626;
                     NYD-sp9"
                     /note="major polyA site"
     polyA_site      2109
                     /gene="Mfap3l"
                     /gene_synonym="4933428A15Rik; 5430405D20Rik; mKIAA0626;
                     NYD-sp9"
                     /note="major polyA site"
     regulatory      4910..4915
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Mfap3l"
                     /gene_synonym="4933428A15Rik; 5430405D20Rik; mKIAA0626;
                     NYD-sp9"
                     /note="hexamer: AATACA"
     polyA_site      4932
                     /gene="Mfap3l"
                     /gene_synonym="4933428A15Rik; 5430405D20Rik; mKIAA0626;
                     NYD-sp9"
     regulatory      6350..6355
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Mfap3l"
                     /gene_synonym="4933428A15Rik; 5430405D20Rik; mKIAA0626;
                     NYD-sp9"
                     /note="hexamer: AATAAA"
     polyA_site      6370
                     /gene="Mfap3l"
                     /gene_synonym="4933428A15Rik; 5430405D20Rik; mKIAA0626;
                     NYD-sp9"
                     /note="major polyA site"
ORIGIN      
        1 gcagagtgca ccggacctcg gcgccgccgg gagccgcact gggcatgctc ggctctcgcc
       61 ggctctggag cccgtaggtg ggaagctccg gctcccggcg gcggggctcg taacccgcat
      121 cgagaagagg cgcgggcggc ggaggaggtt ggtacacgct cggtgctgca gagctccccg
      181 ggtggccatg gcgagaggtg cacggcgacc acccgagtgg cgcagcggtg tcagattctt
      241 cttgaacaag taccaactcc atggatccag gacaggtttg tcccatggcc tgctctgagc
      301 agtgtgcagt ctgagagaag attccattgg caaaccatct ctggccttac ggaacaagca
      361 aagacgatgg gtcttcagaa gagccatctg actgtgtgtt taccaccttc tgtgcccttc
      421 ttaatcctag tatccactct agccactgct aagagtgtga ccaacagcac tttaaatggc
      481 actgatgtgg tcttgggctc tgtgcccgta atcattgcca gaactgacca tatcatagtc
      541 aaagagggga gcagtgcctt gattaattgc agtgcttatg gctttcctga cctagagttt
      601 aagtggtata attctgttgg caagctgctg aaagagatgg acgacgagaa ggagaaagga
      661 ggaggaaaat ggcaaatgct ggacggtggc ctcctgaaca tcaccaaggt gtctttctca
      721 gacagaggta aatacacatg tgtggcatct aacatctatg gcactataaa caacacggtg
      781 acactgagag tcatctttac ctctggagac atgggcgtgt actatatggt ggtgtgcctc
      841 gtggccttca ccatagtcat gatcctcaac atcacccgcc tgtgtatgat gagcagtcac
      901 ctaaagaaga ctgagaaagc catcaatgag ttctttagga cagaaggtgc agagaagctg
      961 cagaaggctt ttgagattgc taaacgcatc cccatcataa cctcagccaa aactctagaa
     1021 cttgccaaag tgactcagtt caaaaccatg gaatttgcta ggtacattga agagcttgcc
     1081 aggagcgtgc ccctgcctcc cctcatcatg aactgcagga cgatcatgga ggagatcatg
     1141 gaagtagtcg ggctggagga gcaggggcag aattttgtga ggcatacccc agaaggccag
     1201 gaagccccag atagggacga ggtatacacc atccccaact cactgaagcg aagtgagtcc
     1261 cccaccgctg actcggatgc ttcgtcattg catgagcagc ctcagcagat tgccatcaag
     1321 gtttcagttc acccccagtc caaaagggat catgtggatg accaggaggg aggacacttt
     1381 gaggtcaaag atgaagagga gacagaacca tcagaggaac attccccaga gactgcagag
     1441 ccttctacag acataacgac cacggagctg acgtccgaag agacgtctcc tgtagaggca
     1501 ccagaacgag gactgccacc agcacaccta gaaacaaccg agccagcagt gacatgtgac
     1561 agaaacacct gcattattta tgaaagccat gtctaatctt aactccgaaa agctatgcat
     1621 atcaagaaaa tcaggggctg ctccttaata caaatgtagt atgcacttgc cgctaagcct
     1681 taccaggaga cgctcatccc ttaggtaaga gtgatgcccc ctcgagaggg aagacgcctg
     1741 catggagttc acgtgactgg aatcacccca gtgaaaagga tctgaagagt gctggggtac
     1801 agaactgata agatggagca ggggtctgtc cgtgtgatct gaactgtaga gaccattctc
     1861 tgccaaattc cttaagtggt gatgcccttt tggccaagag tacactattg ttgtaagacg
     1921 ttctgagttc aggagccctg tctagtgcgt actgcattgc ttttccttgg aaaattacag
     1981 gtctgctaca gtagcaaagg ctcacacatg ggtttgttgc actttgttgt cagtttgaat
     2041 tatcttcgcc gttctttcct aatggagtag ttgtttttat attaatatta attgctcttt
     2101 ctgctggaat cttctgtgtc acctttgtcc ttattttccc tgagtagggt tgacctcaga
     2161 gtcttgggtg tcagccactg acacagttga tatctgtaag tcatatgtaa tgctccaaag
     2221 tagttactac acgccttttt attttcccta atttcctctt taaaaaaatt aataacctca
     2281 catctatttt tcatagactt tttgtttcca atgaagctgc tattgtgaaa ctgagaaaaa
     2341 ctttgccccc agatagcact ttaagagtca aataaaaacg tttacctgcc tgcccagttc
     2401 tgagagcatt cagctgtggt atccagtgag attgtaaatg tttagatata ccagtagcac
     2461 tcatgaaaat ggtttacatg taagtgtaag accaaacgaa gacaggttct ttccctggga
     2521 gatttcctgc caaagacaga gatgtctggt gatttcctga aggtatagca catcaccttc
     2581 ccacaaggcc ttgcaggatc cataagatat tgtcagctcc gtagatataa ggcagcaaaa
     2641 ctagtggctc ggcgaacagt atcaccaggt ccccattaga ctgaatactt gacttgttgg
     2701 gcattgcaag atgaggaaaa taacctagat gacttttatc ctaaaatgat tcaattcttt
     2761 gtcccactaa aatgcaggat gtgtaaggta gcttgatatt agagaaaaca caaaccagcc
     2821 attcacaggt ttaatacttg actgtgccaa taaccagctg ccaggctttt ggcaaggctg
     2881 ggcctcagtt tccttctctg taagacaggg caacctggaa tgaactctga gggcacctcg
     2941 cccccaccta atggcatcac attcagaaga aaagaaccca atagttaaac tttttttttt
     3001 tttgcctctt ttcatgatat gaagttttaa agagttttgc tttcatctct ggagacccca
     3061 cttttaatgc tgtattacta actcaaatga gaaggatcac agcatttttc aacaaaatcg
     3121 agagtcattc ccctccgaaa ataatgaggc cctcttctcc gatttaaatt taatctcggt
     3181 aagaataacg agtactgtta ttttattttt aaatacaaac aagggagact gaaactttaa
     3241 aacagagatc agaagccaca tagtgtgtga tgggcatgat ggagttataa cttcagaggc
     3301 tgcatgggct atcaaaacag acccagatgt ttaatgacca tgtgattgcc atcagaggaa
     3361 gtgaccatgg acaactgctt tcttactgag gtactggtct ttttcatatg agttggagta
     3421 gactatgctg ctaatggtcg ctagtgtagg tcaccccttg aagctcccct tagaatatca
     3481 tggaaagtct ttaaactgta ataatcaatc cttttaagtc aatgggaaca aaagtgggta
     3541 cattaggcga ggttcgtgtg tgatctgcac tctacagcag gggtatatgt aagtgaggat
     3601 agtaggattg tctgtggaaa tgaccaggac aaggctacag acaattcctg tggaaatcaa
     3661 tctgaccagg cttggagttt gatcagattt accctttatg agaaattcct aattgaaata
     3721 tcttatgggt cacctaaaga aacctatagc ctgcagctat aagaagccat gacttctttt
     3781 tgggctctct ggagggcaat ttcatacaga aaaattttat tcccagatct tagaatatac
     3841 agagtccatg attttcatga agattgaaaa atacttttga tatatctgcc cacagtacca
     3901 acagggacta actattgaat gttttgtgat gatatgtgaa ctctattcta ttccgttctc
     3961 attctatcca aacccatgtg tagaattcct catggaaact gcagggcaag gtacccattc
     4021 catacagata ctgatttagg attataagct aaaggaggcc aatttactat gaaataagat
     4081 gtatggccaa agaatgtttc cagtttgatt tggattcttt agcctgcagt gggatagaga
     4141 gtaaggggat aattttcaaa ccttcctctt taaggcacca gctgttcttg ggataagaat
     4201 ctcctacttt aaaaggagct tagcttcata tggaatttct ctatccaaag tctatgctct
     4261 ggatattcca cagcagagcc ttcaaaaatg agaatagaat atgaaatgtg gaaagaatat
     4321 gaaatgtgga aagcctcata acaactcagc tgatcgtttc ccccagaagt gaaccccatt
     4381 cttagaatta ttcatggagt cccattgaac atacacacac acacacacac acacacacac
     4441 acacacacgt gcaacagact catttgggca gttttaaaag tgtaacattc gatcccagca
     4501 ctcaacattc aatcccaatc tttggatctg ctgtagtcat tcttttaaaa ataaaaatca
     4561 atttcaggtc tctgactcat cctgcttata cctctagcaa ttttttttct tgaaattctg
     4621 aaaatgattc acatacatat gcatatttaa ttctcttaga taatctataa acttggatgg
     4681 tatttattct gaatgggaaa aatacccaaa attttatatg gggaaaaaaa tctatgtaat
     4741 ttataatggt ttgttttata tatttatatt ttcatatctt tagggcatat ctgttgttct
     4801 catctttttg tacatcatag ttggcaaaaa gaaaaactaa tacttgacta aaatctctag
     4861 gaaccaaatg tgatatatgt catacataat gtatataaat tgctctagaa atacatgaat
     4921 gttcccaccc aagccaagca ttgttttgtc atgtcattac agccagaatg tctggggtgc
     4981 ttacaaacat tactttttca caaggaagac tgaaaagcct gatatcctac acagtggctc
     5041 tcggactctc tttcccttcg ttatcttatt tgtcccttct ttaactgagc acatccttct
     5101 aaagggcaaa tgagagccag tgagaacaca agaggaatga atctagttat ggcttaggta
     5161 aatcacatta acagattggg ggcatgcttt aaatcccagg ttcaggttgc cattcactgg
     5221 ccttgtggca tctgctcagt tctattgcac acaaagggta gggcatgaag aatgaatgaa
     5281 tgcttgcatg ttttgaacag gcacggtgga catttagtgc agcatagtgg tgactatggg
     5341 gatacccatg tggcactgga agaaatgttg tagaaaatca aatcagctac ttttttctta
     5401 cacactttga agtagtatgt ttattcctgt gttagaactt ttaactggca gtcccagtga
     5461 ttacatgaac tagggatttc cttcccatgt cttcatttgg taagaaatag accatcaaag
     5521 tctctttaaa acaatgtttt ctcagtacat tcaactgctt tcctccatat gacttagcac
     5581 atcctctcag aaaccccata agtaaatttt gtttttattg ttgcttctca aacacttact
     5641 ggtagtcttt aaatatcact caaactccat tatgtattta cacacagttt tgaacatata
     5701 ttaactttaa gatattgatt ttacatttca ccaataaagc cttcaaacca ataacgaagt
     5761 tcattttatt aatagccttt tatgatttct tcagagatta acaggctttg atgaaacaaa
     5821 ccattggtga gtaaaataat caaatagtac ataattatta tattttccaa aagactaagt
     5881 ggttgattat tatacaaaaa aatctcatgt aagaagtatg ctctttgaat gacttttctt
     5941 ttccttaaaa tgggcatgta aggggctagc tctgagacta ctaaaatcac taaagatagc
     6001 tagaataaag ctagaaagta aatcattcta agagcatcat tatggagaaa atgaattttt
     6061 attatttaac caattataaa agcctcaaaa tgcatctcta atactacaga accatgaaca
     6121 gtgagttggt ttcaaagaat atgttcgcat ctattttttg gtttactgtg cttcactagt
     6181 tctgaacatt ctttgttaaa ctgggaatga gaaatgagat agaagatgta tcaggaagaa
     6241 ataagaaata atttaaaggt ataaacaaat gactaagcta gaagttggta tcactgtagt
     6301 aaagagaaac catggcttgt gatccatcct gtagtctgat tgttgcttta ataaagggtt
     6361 tacacaggtg tg
//
