LOCUS       NM_025633               1267 bp    mRNA    linear   ROD 14-JUN-2024
DEFINITION  Mus musculus methionyl aminopeptidase type 1D (mitochondrial)
            (Metap1d), transcript variant 3, mRNA; nuclear gene for
            mitochondrial product.
ACCESSION   NM_025633
VERSION     NM_025633.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1267)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1267)
  AUTHORS   Ghazalpour,A., Doss,S., Zhang,B., Wang,S., Plaisier,C.,
            Castellanos,R., Brozell,A., Schadt,E.E., Drake,T.A., Lusis,A.J. and
            Horvath,S.
  TITLE     Integrating genetic and network analysis to characterize genes
            related to mouse weight
  JOURNAL   PLoS Genet 2 (8), e130 (2006)
   PUBMED   16934000
REFERENCE   3  (bases 1 to 1267)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL928931.15.
            
            On Mar 21, 2023 this sequence version replaced NM_025633.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK005241.1, AK010067.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: reported by MitoCarta
            RefSeq Select criteria             :: based on conservation,
                                                  expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-66                AL928931.15        21579-21644
            67-224              AL928931.15        75031-75188
            225-374             AL928931.15        77987-78136
            375-523             AL928931.15        79658-79806
            524-566             AL928931.15        80372-80414
            567-730             AL928931.15        83883-84046
            731-828             AL928931.15        90779-90876
            829-876             AL928931.15        92048-92095
            877-955             AL928931.15        92963-93041
            956-1267            AL928931.15        93129-93440
FEATURES             Location/Qualifiers
     source          1..1267
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 42.42 cM"
     gene            1..1267
                     /gene="Metap1d"
                     /gene_synonym="2310066F24Rik; 3110033D18Rik; MAP 1D;
                     Map1d; MetAP 1D; Metapl1"
                     /note="methionyl aminopeptidase type 1D (mitochondrial)"
                     /db_xref="GeneID:66559"
                     /db_xref="MGI:MGI:1913809"
     exon            1..66
                     /gene="Metap1d"
                     /gene_synonym="2310066F24Rik; 3110033D18Rik; MAP 1D;
                     Map1d; MetAP 1D; Metapl1"
                     /inference="alignment:Splign:2.1.0"
     CDS             27..1034
                     /gene="Metap1d"
                     /gene_synonym="2310066F24Rik; 3110033D18Rik; MAP 1D;
                     Map1d; MetAP 1D; Metapl1"
                     /EC_number="3.4.11.18"
                     /note="isoform 3 precursor is encoded by transcript
                     variant 3; methionine aminopeptidase-like 1; methionine
                     aminopeptidase 1D, mitochondrial; peptidase M 1D; metAP
                     1D"
                     /codon_start=1
                     /product="methionine aminopeptidase 1D, mitochondrial
                     isoform 3 precursor"
                     /protein_id="NP_079909.1"
                     /db_xref="CCDS:CCDS16115.1"
                     /db_xref="GeneID:66559"
                     /db_xref="MGI:MGI:1913809"
                     /translation="MAAPIGVPLLVRGGCQRILSSPLNHIYLHKRSGSQQRRHFFFWR
                     QRDISHSVVSPAAVSPAHPVPKRIKKPDYVTTGIVPDWGDSIEVKDEDQIQGLREACR
                     LARHVLLLAGKSLKVDMTTEEIDALVHWEIIRHDAYPSPLGYGRFPKSVCTSVNNVLC
                     HGIPDSRPLQDGDIINIDVTVYYNGYHGDTSETFLVGNVDESGKKLVEVARRCRDEAI
                     AACRAGAPFSVIGNTISRITHQNGLQVCPHFVGHGIGSYFHGHPEIWHHANDNDLPME
                     EGMAFTIEPIITEGSPEFKVLEDAWTVVSLDNQRSAQFEHTVLITPRGVEILTKLPQE
                     A"
     exon            67..224
                     /gene="Metap1d"
                     /gene_synonym="2310066F24Rik; 3110033D18Rik; MAP 1D;
                     Map1d; MetAP 1D; Metapl1"
                     /inference="alignment:Splign:2.1.0"
     exon            225..374
                     /gene="Metap1d"
                     /gene_synonym="2310066F24Rik; 3110033D18Rik; MAP 1D;
                     Map1d; MetAP 1D; Metapl1"
                     /inference="alignment:Splign:2.1.0"
     exon            375..523
                     /gene="Metap1d"
                     /gene_synonym="2310066F24Rik; 3110033D18Rik; MAP 1D;
                     Map1d; MetAP 1D; Metapl1"
                     /inference="alignment:Splign:2.1.0"
     exon            524..566
                     /gene="Metap1d"
                     /gene_synonym="2310066F24Rik; 3110033D18Rik; MAP 1D;
                     Map1d; MetAP 1D; Metapl1"
                     /inference="alignment:Splign:2.1.0"
     exon            567..730
                     /gene="Metap1d"
                     /gene_synonym="2310066F24Rik; 3110033D18Rik; MAP 1D;
                     Map1d; MetAP 1D; Metapl1"
                     /inference="alignment:Splign:2.1.0"
     exon            731..828
                     /gene="Metap1d"
                     /gene_synonym="2310066F24Rik; 3110033D18Rik; MAP 1D;
                     Map1d; MetAP 1D; Metapl1"
                     /inference="alignment:Splign:2.1.0"
     exon            829..876
                     /gene="Metap1d"
                     /gene_synonym="2310066F24Rik; 3110033D18Rik; MAP 1D;
                     Map1d; MetAP 1D; Metapl1"
                     /inference="alignment:Splign:2.1.0"
     exon            877..955
                     /gene="Metap1d"
                     /gene_synonym="2310066F24Rik; 3110033D18Rik; MAP 1D;
                     Map1d; MetAP 1D; Metapl1"
                     /inference="alignment:Splign:2.1.0"
     exon            956..1267
                     /gene="Metap1d"
                     /gene_synonym="2310066F24Rik; 3110033D18Rik; MAP 1D;
                     Map1d; MetAP 1D; Metapl1"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      1267
                     /gene="Metap1d"
                     /gene_synonym="2310066F24Rik; 3110033D18Rik; MAP 1D;
                     Map1d; MetAP 1D; Metapl1"
                     /note="major polyA site"
ORIGIN      
        1 ctcttggcca cgtgaccgga gccaacatgg cggcgcccat cggcgtcccc ctgctcgtcc
       61 gtggaggttg tcagagaatt ctgtcttcgc cactcaatca tatctactta cacaagcggt
      121 caggcagtca acaaagaaga catttctttt tctggagaca aagggatatc tcccacagtg
      181 tggtttcacc ggctgccgtc tctcccgcac atcctgtccc caagcgcata aagaagccag
      241 actacgtgac gacaggcatt gtgccggact ggggagacag catagaagtg aaggatgaag
      301 atcagattca agggcttcgt gaggcttgtc ggctggcgag acacgtcctc ctcctggctg
      361 ggaagagttt aaaggttgac atgacaactg aagagataga tgcgcttgtt cattgggaaa
      421 tcatcaggca tgacgcatat ccctcacctc tgggctatgg acgctttcca aaatctgttt
      481 gcacctctgt aaacaacgtg ctctgtcatg gcattcctga cagccgacct cttcaggatg
      541 gagatattat caacattgat gtcacggtct attacaatgg ctaccatgga gacacctctg
      601 aaacctttct ggtgggcaat gtggatgaaa gtggtaaaaa gttagtggag gttgccagga
      661 ggtgtagaga tgaagcgatt gcagcctgca gagctggggc ccccttctct gtaattggaa
      721 acacaatcag ccgcataact catcagaatg gtttgcaagt ctgtccacat tttgtgggac
      781 atgggatagg atcatacttt catggacacc cagaaatttg gcatcatgca aatgacaatg
      841 atctgcccat ggaggagggc atggctttca ccatagagcc aatcatcact gaaggttccc
      901 cagaatttaa agtccttgag gacgcatgga ccgtggtctc cctagacaac caaaggtctg
      961 cgcagttcga gcacacagtc ctcatcacgc caaggggagt ggagatactg accaaactgc
     1021 cacaagaagc ctgagaatcg gccagaaggc caccaagacc cagaggactg agaaagcatc
     1081 cccaggccac acacaagtct gcagtgtcta ggagaaaacg cagagaggac gggctctggg
     1141 gactcaggtc caacaggaca gcccttgtgg ctagaaaaac aaacctccct tcctgggcag
     1201 gtggttcgcc cttttcctgt ccatattccg cccaagttta aaaaaaaaaa aaaaaaaaac
     1261 tctcaaa
//
