LOCUS       NM_025543                781 bp    mRNA    linear   ROD 13-JUN-2024
DEFINITION  Mus musculus malignant T cell amplified sequence 2 (Mcts2), mRNA.
ACCESSION   NM_025543
VERSION     NM_025543.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 781)
  AUTHORS   Huang,Z., Han,Z., Zhang,F., He,H., Yu,S. and Wu,Q.
  TITLE     Spatiotemporal expression of retrogene-host pair Mcts2/H13 in mouse
            embryo, and Mcts2 has no influence on H13 transcription pattern in
            NIH/3T3 cells
  JOURNAL   Acta Histochem 116 (2), 312-318 (2014)
   PUBMED   24063864
REFERENCE   2  (bases 1 to 781)
  AUTHORS   McCole,R.B., Loughran,N.B., Chahal,M., Fernandes,L.P.,
            Roberts,R.G., Fraternali,F., O'Connell,M.J. and Oakey,R.J.
  TITLE     A case-by-case evolutionary analysis of four imprinted retrogenes
  JOURNAL   Evolution 65 (5), 1413-1427 (2011)
   PUBMED   21166792
REFERENCE   3  (bases 1 to 781)
  AUTHORS   Wood,A.J., Roberts,R.G., Monk,D., Moore,G.E., Schulz,R. and
            Oakey,R.J.
  TITLE     A screen for retrotransposed imprinted genes reveals an association
            between X chromosome homology and maternal germ-line methylation
  JOURNAL   PLoS Genet 3 (2), e20 (2007)
   PUBMED   17291163
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL845162.9.
            
            On Jun 27, 2022 this sequence version replaced NM_025543.2.
            
            ##Evidence-Data-START##
            Transcript is intronless :: AK002563.1, BY703078.1 [ECO:0000345]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            imprinted gene         :: PMID: 17291163
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-781               AL845162.9         167893-168673
FEATURES             Location/Qualifiers
     source          1..781
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 75.41 cM"
     gene            1..781
                     /gene="Mcts2"
                     /gene_synonym="2400002F11Rik; MCT-2"
                     /note="malignant T cell amplified sequence 2"
                     /db_xref="GeneID:66405"
                     /db_xref="MGI:MGI:1913655"
     exon            1..781
                     /gene="Mcts2"
                     /gene_synonym="2400002F11Rik; MCT-2"
                     /inference="alignment:Splign:2.1.0"
     CDS             101..646
                     /gene="Mcts2"
                     /gene_synonym="2400002F11Rik; MCT-2"
                     /note="multiple copies T-cell malignancies 2"
                     /codon_start=1
                     /product="malignant T-cell-amplified sequence 2"
                     /protein_id="NP_079819.1"
                     /db_xref="CCDS:CCDS38281.1"
                     /db_xref="GeneID:66405"
                     /db_xref="MGI:MGI:1913655"
                     /translation="MFKKFDEKESVSNCIQLKTSVIKGIKSQLTEQFPGIEPWLNQIM
                     PKKDPVKIVRCHEHMEILTVNGELLFFRQRKGPFYPTLRLLHKYPFILPHQQVDKGAI
                     KFVLSGANIMCPGLTSPGAKLYTAAVDTIVAVMAEGKEHALCVGVMKMAAADIEKINK
                     GIGIENIHYLNDGLWHMKTYK"
     regulatory      675..680
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Mcts2"
                     /gene_synonym="2400002F11Rik; MCT-2"
                     /note="hexamer: TATAAA"
     polyA_site      692
                     /gene="Mcts2"
                     /gene_synonym="2400002F11Rik; MCT-2"
                     /note="major polyA site"
     regulatory      758..763
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Mcts2"
                     /gene_synonym="2400002F11Rik; MCT-2"
                     /note="hexamer: AACAAA"
     polyA_site      781
                     /gene="Mcts2"
                     /gene_synonym="2400002F11Rik; MCT-2"
                     /note="major polyA site"
ORIGIN      
        1 agatgccggt gccatccttc ctgtagaccg cgactcggac ggtcggcgat ccacgcctcg
       61 cctcatctct catacctgac ggtgcccctt caccaagatc atgttcaaga aatttgacga
      121 gaaggaaagt gtgtccaact gcatccaact gaaaacttcc gttattaagg gtattaagag
      181 ccaactgact gagcagtttc caggtatcga gccgtggctt aatcaaatca tgcctaagaa
      241 agatcccgtc aaaatagtga gatgccatga acacatggaa atccttacag tcaacggaga
      301 attactgttt ttcaggcaga gaaaaggacc tttttatcca acgctaagac tacttcacaa
      361 atacccgttt atcctgccac accagcaggt cgacaaagga gccatcaaat ttgtgctcag
      421 tggtgcaaat atcatgtgcc cgggtttaac gtctcctgga gcgaagctct acactgctgc
      481 agtagatacc atcgtggcgg tcatggcaga ggggaaagag catgccctgt gtgtcggagt
      541 catgaagatg gctgcagcag acattgagaa aatcaacaag gggatcggca ttgagaatat
      601 ccattatcta aatgacgggc tgtggcacat gaagacatat aagtgagcct tagacacaat
      661 acacctgagc taaatataaa tattgcgttg tatctctgtg tgtgtctgta tgtgacatca
      721 tgaagacaat acctctatgg ttatgctgaa taaattcaac aaataccttt aaaaaacaaa
      781 a
//
