LOCUS       XM_030246638            8513 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus methyl-CpG binding domain protein 5 (Mbd5),
            transcript variant X18, mRNA.
ACCESSION   XM_030246638
VERSION     XM_030246638.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000068.8) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_030246638.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8513
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="2"
     gene            1..8513
                     /gene="Mbd5"
                     /gene_synonym="9430004D19Rik; C030040A15Rik; Gm1630"
                     /note="methyl-CpG binding domain protein 5; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 mRNAs, 18 ESTs, 330 long SRA reads, and 99% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 16 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:109241"
                     /db_xref="MGI:MGI:2138934"
     CDS             1301..5284
                     /gene="Mbd5"
                     /gene_synonym="9430004D19Rik; C030040A15Rik; Gm1630"
                     /codon_start=1
                     /product="methyl-CpG-binding domain protein 5 isoform X4"
                     /protein_id="XP_030102498.1"
                     /db_xref="GeneID:109241"
                     /db_xref="MGI:MGI:2138934"
                     /translation="MNGGKECDGGDKEGGLAAIQVPVGWQRRVDHNGVLYISPSGSLL
                     SCLDQVKTYLLTDGTCKCGLECPLILPKVFNFDPGAAVKQRTAEDVKADDDVTKLCIH
                     KRKIIAVATLHQSMEAPHPSLVLTSPGGGTNATPVVPSRAATPRSVRNKSHEGITNSV
                     MPECKNPFKLMTGSSNAMGRLYMQDLPGSQQQELHPVYPRQRLGSSEHGQKSPFRGSH
                     GGLPSPASSGSQIYGDGSISPRTDPLGSPDVFTRNNPGFHGAPNSSPIHLNRTPLSPP
                     SVMLHGSPVQSSCAMAGRTNIPLSPTLTTKSPVMKKPMCNFSTNMEIPRAMFHHKPPQ
                     GPPPPPPPSCALQKKPLTSEKDPLGILDPIPSKPVNQNPIIINPTSFHSNVHSQVPVM
                     NVSMPPAVVPLPSNLPLPTVKPGHMNHGSHVQRIQHSASTSLSPSPVTSPVHMMGTGI
                     GRIEASPQRSRSSSTSSDHGNFMMPPVGPQATCSGIKVPPRSPRSTIGSPRPSMPSSP
                     STKSDGHHQYKDIPNPLIAGMSNVLNTPSSAAFPTAPAGNGSVKSQPGLLGMPLNQIL
                     NQHNAASFPASSLLSAAAKAQLANQNKLAGNNSSSSNNSGAVASSGNTEGHSTLNTMF
                     PPTANMLLPTGEGQSGRAALRDKLMSQQKDSLRKRKQPPTTVLSLLRQSQMDSSAAPK
                     PGPDLLRKHGQGSFPISSMSQLLQSMSCQSSHLSSNSTPGCGGSNTALPCSANQLHFP
                     DPNMNSTVLQNSLTQSIPLRGEAVHCHNANTNFVHSNSPVPNHHLAGLINQIQASGNC
                     GMLSQSGMALGNSLHPNPPQSRISTSSTPVIPNSIVSSYNQTSSEAGGSSLPSSIAIA
                     GSNHPAITKTTSVLQDGVIVTTAAGNPLQSQLPIGSDFPFVGQEHALHFPSNSTANNH
                     LPHPLNPSLLSSLPISLPVNQQHLLNQNLLNILQPSAGEGKSEINLHPLGFLNPNVNA
                     ALAFLSGDVDGQVLQPVHFQLLAALLQNQAQAAAMLPLPSFNLTISDLLQPQNTPLPL
                     LTQMTAPPDRLPSNQSDNSRADTLLGSPLGNPLAGSDTTFNPLLLPAVTGASGLMALN
                     PQLLGGVLNSASANTAIHPEVSIATSSQATTTTTTTSSAVAALTVSTLGGTAVVSMAE
                     TLLNISNNAGNPPGPAKLNSNSMVPQLLNPLLGTGLLGDISSINNSLNNHQLTHLQSL
                     LNSNQMFPPNQQPQQHLLQGHQNLQAFQGQPTVPCPANNNPMACLFQNFQVEPEKLKT
                     LTEGLEAYSRVRKRSRKSGKLNNHLEAAIHEAMSELDKMSGTVHQIPQGDRQMRPPKP
                     KRRKISR"
ORIGIN      
        1 cctcctccac tccccccctt tattaccctt tgtgtcatcc tccacagctc cagggaaggc
       61 actcaaaagt ggggggcagg aaagataact tctacaagaa cctgtgtatc ggatcctaac
      121 taaatcaaaa tgtttgaaat cagaagatca tgatcggtgc ttttgaatgt gtgtagtttt
      181 cagaggaatt aaaaacagaa gagaaaagga caactttggg agagcatcaa agatgtccac
      241 ttctgcctcc gtaagatagc tattgcaggc tgtgtggtgg agaaaatacc tatagaaatt
      301 aagacactca agcgccacag aaatattaca agaaatcaag agcacagaat atttccttcc
      361 atcaatcctc agaaccctga aacatttcta actccatcaa acacagagca cagaggaagg
      421 cccaccttgg cagatggcca cagaggatgt caacaatttc ttggagagag aagcagcact
      481 cccttgctga gcacagtgcc cctggacact tgccaccatt acactgttgg agctcacgct
      541 tgctatgctt gtcccagttt ctctccagaa gaagttggaa acctaaccgc ctacagaggc
      601 cagaatggtg gaatgaaaca ggaagccgct gaagggagct ggaaagccaa gccctttctg
      661 gaggagcagc ccctgctctg ttccagataa ccgtggcgag gcagaaatgt tgactcactc
      721 ttaccgcact cactgtccag tttctcaggc tatatcaatg gaattttgaa gacatgaaaa
      781 catcagatga accagcctgc aacaccttgg attcccattg gaaaatgaag tggaagctta
      841 aagcatgtgg cctttaacgg cgggcagtac tggagacatt acctggctgc tggtgtcagg
      901 acagaccggt gtctagatag tcgaggttat tttagtccag tatcaaggtt caaggcaaaa
      961 tgtgcaacta aaaacttttc atcccttcct cttctgcttc agacaggtac cagcataggt
     1021 gaattatgat tttccctggt tgagagtgtt tggttttgcc tatgtagacc atgcctagga
     1081 atgaaatact tttttattta atgtagatta taatggggaa cactttcaca atggctgatt
     1141 tcaaggactt ggttccaaac tgagcccaag tttccccgtg tacttcgtag tccgggaaaa
     1201 ctgtgctatg ctggcccagt tttgaaggcc accatgctct gtaatagacg gatatcatct
     1261 tattgctgat atctttggag cacccaagca gacacagaaa atgaatggag gcaaagagtg
     1321 tgacggagga gacaaggaag gaggtcttgc agctatccag gttcctgtgg gttggcagcg
     1381 gcgtgtggac cataatggcg tgctgtacat cagtcccagt gggtctttgt tatcttgctt
     1441 ggaccaggtt aagacatacc tgctcactga cggaacatgc aagtgtggct tggaatgtcc
     1501 tcttattctt cccaaggtgt ttaattttga tcctggagct gctgtgaagc agagaactgc
     1561 agaagatgtt aaggcagatg atgatgtcac aaagctatgc atacataaaa gaaagatcat
     1621 tgcagtggcc acactccatc aaagcatgga ggccccgcat ccttctctgg tgctcaccag
     1681 tcctggagga ggaacaaatg caactccagt agtaccttca cgggcggcaa ctccaagatc
     1741 agtaagaaac aagtctcatg aaggaattac aaattctgta atgccagaat gtaagaatcc
     1801 tttcaagtta atgactggat catcaaatgc catgggaagg ctatacatgc aagacctgcc
     1861 tggaagccag cagcaggagc tccaccctgt ctacccccgc cagagattgg gcagtagtga
     1921 gcatggacag aaatctccat ttcgtggcag ccatggaggc ctgcctagcc cagcatcatc
     1981 agggtctcag atctatggag atggctcaat ctctccaagg actgacccgc tcggaagccc
     2041 tgatgtcttc acaagaaata accctggttt tcatggagct cccaattcca gccctattca
     2101 cctaaatagg actcctcttt ctccaccttc agtaatgcta catggttctc ccgtacagtc
     2161 atcctgtgca atggctggaa gaactaatat acctctttcc ccaaccttga ctacaaagag
     2221 tccagtaatg aaaaaaccaa tgtgtaattt ttcaactaat atggaaatac cacgagcaat
     2281 gttccaccac aaaccacccc aaggcccacc tccccctcct ccaccttctt gtgctcttca
     2341 gaaaaagcca ttaacatctg agaaagatcc acttggcatt cttgacccta ttcctagtaa
     2401 accagtgaat cagaacccta ttatcattaa tccaaccagt ttccattcaa atgtccactc
     2461 tcaggtacct gtgatgaatg taagcatgcc tcctgctgtt gttcctttgc caagtaatct
     2521 ccctttgcca actgtaaaac ctggtcatat gaatcatggg agtcatgtac aaagaattca
     2581 gcattcagct tcaacctccc tgtccccttc tccagtgaca tccccagtgc acatgatggg
     2641 gactggaatt ggaaggattg aggcatcgcc ccaaagatca cgctcatctt ccacatcatc
     2701 agatcatgga aatttcatga tgccacctgt aggaccccag gccacttgta gtggcataaa
     2761 ggttccacct aggtcaccaa ggtcaacaat aggttcccca aggccatcaa tgccatcaag
     2821 cccttctacc aagtctgatg gacatcatca gtacaaggat atccctaacc cattaattgc
     2881 tggaatgagt aatgtactca ataccccaag cagtgcagct tttcctactg cacctgccgg
     2941 aaatggttct gtaaagagtc agcctggttt gctgggaatg cctttaaatc agatcttgaa
     3001 ccagcacaat gctgcctcct ttccagcaag tagtttactc tcagcagcag ccaaagcaca
     3061 gctagcaaat caaaacaaac ttgctggtaa caacagtagc agcagtaaca attctggagc
     3121 tgttgccagc agcggcaaca ctgaaggaca cagcacttta aacaccatgt tccctccaac
     3181 tgccaacatg cttctcccaa caggtgaagg tcaaagtggt cgagcagcac taagagataa
     3241 gttgatgtct cagcaaaaag actcattacg gaaaagaaag cagccaccca ccacagtgtt
     3301 gagtttgctc agacagtccc aaatggatag ttctgcagct cctaaacctg gacctgactt
     3361 gctaaggaag catgggcagg ggtcatttcc catcagttca atgtctcagt tactacagtc
     3421 tatgagttgt caaagctctc acttgagtag caatagtacc ccgggttgtg ggggatcaaa
     3481 tactgctttg ccttgctctg ctaaccagct gcattttcca gatcctaata tgaattccac
     3541 tgttcttcag aattcactga cacagagcat acctttaaga ggggaagccg tgcactgcca
     3601 caatgcaaac actaactttg ttcacagtaa cagtccagtc cccaaccacc atcttgcagg
     3661 tttaataaat cagattcagg ctagcgggaa ctgtgggatg ctcagtcagt cgggcatggc
     3721 tttaggaaac tcattacatc ccaatccacc tcagtcaaga atttcaacgt cctccactcc
     3781 agtgatacca aacagcattg ttagcagcta taatcaaaca agttctgaag caggtggttc
     3841 aagcctgccg tcctccatag ctatagctgg cagcaaccac cctgccatca caaagacaac
     3901 atctgttctc caagatggtg tcatagtcac caccgcagct ggaaacccac tgcagagtca
     3961 gctgcccatt gggagtgact ttccttttgt tggccaagag catgcccttc attttccatc
     4021 caacagcacc gcaaacaacc atcttccaca ccccttgaac cccagcctcc tcagctctct
     4081 acctatctct ttgccagtga atcaacagca tctcctaaac cagaatctat taaatatcct
     4141 ccagccttca gcaggagaag gcaagtctga gatcaacctc caccctttag gttttctcaa
     4201 cccgaatgta aacgctgctt tagctttcct ctccggtgac gtggatgggc aggtattaca
     4261 gcctgtccac tttcagctct tagcagccct gcttcagaac caagcccaag cagctgccat
     4321 gcttcccctg ccgtctttca atctgaccat ctcagatctt ttgcaaccgc aaaatacccc
     4381 tttaccctta ttaacacaga tgacagcccc accagaccgt ttgccaagca atcagtcaga
     4441 caacagccga gctgataccc ttttaggcag ccccctggga aaccctttag caggcagtga
     4501 cactactttt aaccccctgc tcctcccagc tgtcactggg gcctcaggat taatggcctt
     4561 gaatccccag ctgttggggg gtgtcctgaa ctcggcatcg gccaacaccg ctattcatcc
     4621 agaggtttcc atagcaacct cctcccaggc aaccactacc acaaccacta catcatcagc
     4681 agtggcagca ctgactgtct caacacttgg tgggacagca gtggtgtcaa tggcagaaac
     4741 attgctgaat atatctaata atgctgggaa tccacctggt ccagctaaac tcaacagtaa
     4801 ctctatggtg ccacagctac ttaaccctct actggggaca ggtctgcttg gtgatatatc
     4861 atccataaac aattcattga ataaccatca actgactcat ctacagtcgc tactaaacag
     4921 caatcagatg tttcctccaa atcagcagcc gcagcaacac cttctccagg gacaccagaa
     4981 tctccaggcc ttccaaggac aacccacagt cccttgccca gctaacaata accccatggc
     5041 ttgtctgttt cagaacttcc aggtggagcc cgagaagttg aagactctca cagaaggttt
     5101 agaagcctac agccgcgtcc ggaaaaggag cagaaaaagt gggaaactaa ataaccattt
     5161 agaagctgct attcacgagg ccatgagcga actggacaaa atgtctggga ctgttcacca
     5221 aatcccacag ggtgacagac aaatgaggcc ccccaaaccc aagaggagga agatctccag
     5281 ataacagaga ctgttccact gacacacagt gttgatcaaa ggagcatgta cagacacacc
     5341 tgtatgtggg tattgatatg accaccgtta gatcaatctg taatctacgg cagatagcta
     5401 ccaccaccac agggccctaa agggaacagc aatggagaca agcattgatc aggaaggaaa
     5461 atgaatgtca aaagcaaaac aacaatcaaa atccctgtat gaacaaagcg gtaaatggtc
     5521 acgtgatcgc tgagaacgtt ttctattgta ctaaaattgt gattataaga aatagtccaa
     5581 atgtttctgg agaattttca gtgttgtata tagaaaatac agaatttcat ggcgatatta
     5641 gaaatgtaaa tattgtacaa tattgtcatg tacaagcata cttaatgcac actttatctt
     5701 ttattgtaca aagaaatagt gtacaaaaat ctttggtttc tatggagtac acctaccaga
     5761 gactaccagt gtaaagtgat aaataaaaat acaacctaaa tgcttttcta tgataatgta
     5821 aaagatgctg gttttgtatt taatggcaga ggaaaggcat ggtgatgtaa tacacacatc
     5881 atggcataca ctgcacacca ctgagtgttc atttataatg tctctttaaa cggcccagaa
     5941 acactagact gagttttggg tatctaggaa gtctccaaat ttctgaagag agaaatgctc
     6001 gtgagcctaa atcaaggatt caggacctca accatttgtt gcatcgttat tctttgacag
     6061 ttttatacat ttctataatg agtttgagcc acttccactc ctccacctgc tccttcatct
     6121 cctcgctctt gccagtaagt gttctcctgc tttggtgtgt ccctgggcct gccctgcaga
     6181 gcttgatcag aacatgtggg ggtggcgggg ttgtactgac agcacaaggg caactagtct
     6241 ctggctacac caggaggaaa aacgaggagg ctaccaagca atcattagct gctaacagtc
     6301 actcaggtgg agtggggcca tgtgggcccc tccaccatcc atggggaagc agtgatatgc
     6361 tcagttctgt gtgtgtgtgt tgtgcagata accacagctg cagtgatttc atgggtgaga
     6421 tggtcctgac acgtgcggag cacactggcc tagcctctgg tcttatcatc tctccacccc
     6481 ctttcctacc ttggaaaggt gatatggatc tcccattcag ggcactttta aaacagaata
     6541 ggttttataa aatttaaaaa aaaaaaaaac ttagatgaac tactttactc aatcatttat
     6601 ttagtaagtc tttgatggct acctgttgat cgttttctgt cagtgatgct cagaatcaga
     6661 ttttgtttgt ttgggggttt tttgcataca acatctgaca aagtaaaact tggtaaaact
     6721 tctcatttct acacgtggag acagaagcga tactttgaaa ccatctacag acagaaggat
     6781 gatgacagtt cagtttttcc ttttcagagt ggaaacataa atcaaaccac attttatatc
     6841 attcgtcagt accaatttac ccagaagtgt gaaagtggct tgcaaaatta cgagcaatgg
     6901 taatttttat tagtattatg taacatatca gatttatttt atttaaagaa ttatttatat
     6961 cattcacaga ttatttttat atatgcatat atattaatgt ggctgaaata tgtgggttga
     7021 gtcttattaa gcaaattatt tatgttgcat taaataagag aaatgtgaaa taaatataga
     7081 aaattactcc attacaagta tacagactta aaactgagcg cataaagtac agggtaatga
     7141 tcaataacca aggacagtgt attgtgcgtg atggtgccat aagcaaaatt tcagacagcc
     7201 tcagttagag attgtcaaaa gaaagaattt gttatccctc tttcttggaa tcagcctcca
     7261 tccaaaaccc cagcgaacac tggctgtcct ctagtcctgc cctcagctgc tgggacattg
     7321 tcccctacca ggctctggac tccaagatgc tattcctttc taaccctcct cctcctaaac
     7381 tccacagtcc catcaggtaa cagtgctcca ggaactcaag ataaaagaga caaagctcag
     7441 agtacacagg acatacacac aagcgcacac acacacacac acacacacac acacacacac
     7501 acacaccacc caggtccccc cccccctttt ttttaagaca aggtctctct atgtagctct
     7561 ggctatcctg gaacttgcta tgtagaccag gctggcctgg aatacgtaga gatcctccag
     7621 cctctgcctc ccaagtgctg ggattaaagg tgtgtgccac cacacacatc ctccaccagg
     7681 ctcacttttg atagcaaagt tcagagattt cctctcagat atttctgtgt cttggtgtct
     7741 gttctgtcct caccttgacc cttatcttca agcctggagg aatgcaaaga gctgcatcag
     7801 aacttccttc catggtacgt tcattgttca ttttgtcctc tgcgaaggtg agatgagtat
     7861 caagagggag agtctcgtgt gtggtctgtt ctatgtgtgc ttcccagaac tgtgaagggg
     7921 caggaaatga attacatttc ctttggtaat tttcctcatt tatttcaaat gaggaaaact
     7981 taactaagaa ggccttgtgt catgtaatgg acttgtgttt gttacaggtt gatatatttg
     8041 gtctctttaa gcaactattg tcttgtcttg ttttgttttg ttttgttttg catcagcctg
     8101 cttcatcttg tttgtgtcca tagctgtgtg tattctcaga tagacacggg cgtgtttgta
     8161 tgcctggtgg gtgtgcatgt gtgacctgtt gctgtacaaa agacgagtca gcctttgccc
     8221 ttccatcttt actcggccac cccttctttg tgtatttcca tgcgcaccat gatatacttt
     8281 gcgtcaggaa accttatgaa tctgtctctg ccgtgacctc acagttgctc gtggctttgc
     8341 tgcgggtgca cagtgaggct gagcctgttc acacggggct tcctctttct cgtacacttc
     8401 catggcttca gataagcagg gaatgtaaat actgtcagga ttttgggtcg tgcaaagctg
     8461 tgacactttt taaaatgtta tatctacctt acaattaaaa aactggtaac tca
//
