LOCUS       NM_028557                888 bp    mRNA    linear   ROD 05-JUN-2024
DEFINITION  Mus musculus methyl-CpG binding domain protein 3-like 1 (Mbd3l1),
            transcript variant 1, mRNA.
ACCESSION   NM_028557
VERSION     NM_028557.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 888)
  AUTHORS   Yokoyama,S., Ito,Y., Ueno-Kudoh,H., Shimizu,H., Uchibe,K.,
            Albini,S., Mitsuoka,K., Miyaki,S., Kiso,M., Nagai,A., Hikata,T.,
            Osada,T., Fukuda,N., Yamashita,S., Harada,D., Mezzano,V., Kasai,M.,
            Puri,P.L., Hayashizaki,Y., Okado,H., Hashimoto,M. and Asahara,H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
REFERENCE   2  (bases 1 to 888)
  AUTHORS   Jin,S.G., Tsark,W., Szabo,P.E. and Pfeifer,G.P.
  TITLE     Haploid male germ cell- and oocyte-specific Mbd3l1 and Mbd3l2 genes
            are dispensable for early development, fertility, and zygotic DNA
            demethylation in the mouse
  JOURNAL   Dev Dyn 237 (11), 3435-3443 (2008)
   PUBMED   18942147
  REMARK    GeneRIF: Mbd3l1 and Mbd3l2 are not involved in genome-wide
            demethylation of paternal genomes in mouse zygotes and are
            dispensable for normal development.
REFERENCE   3  (bases 1 to 888)
  AUTHORS   Jiang,C.L., Jin,S.G. and Pfeifer,G.P.
  TITLE     MBD3L1 is a transcriptional repressor that interacts with
            methyl-CpG-binding protein 2 (MBD2) and components of the NuRD
            complex
  JOURNAL   J Biol Chem 279 (50), 52456-52464 (2004)
   PUBMED   15456747
  REMARK    GeneRIF: interacts with methyl-CpG-binding protein 2 (MBD2) and
            components of the NuRD complex
REFERENCE   4  (bases 1 to 888)
  AUTHORS   Jiang,C.L., Jin,S.G., Lee,D.H., Lan,Z.J., Xu,X., O'Connor,T.R.,
            Szabo,P.E., Mann,J.R., Cooney,A.J. and Pfeifer,G.P.
  TITLE     MBD3L1 and MBD3L2, two new proteins homologous to the
            methyl-CpG-binding proteins MBD2 and MBD3: characterization of
            MBD3L1 as a testis-specific transcriptional repressor
  JOURNAL   Genomics 80 (6), 621-629 (2002)
   PUBMED   12504854
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC162941.5, AK006927.1 and BC049738.1.
            
            On Oct 27, 2017 this sequence version replaced NM_028557.2.
            
            Transcript Variant: This variant (1) represents the longest
            transcript. All three variants encode the same protein.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC049738.1, AK006927.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-36                AC162941.5         20547-20582         c
            37-143              AK006927.1         2-108
            144-144             AC162941.5         14369-14369         c
            145-864             AK006927.1         110-829
            865-888             BC049738.1         845-868
FEATURES             Location/Qualifiers
     source          1..888
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 7.06 cM"
     gene            1..888
                     /gene="Mbd3l1"
                     /gene_synonym="1700070G05Rik; 1700095H13Rik; Mbd3l"
                     /note="methyl-CpG binding domain protein 3-like 1"
                     /db_xref="GeneID:73503"
                     /db_xref="MGI:MGI:1920753"
     exon            1..75
                     /gene="Mbd3l1"
                     /gene_synonym="1700070G05Rik; 1700095H13Rik; Mbd3l"
                     /inference="alignment:Splign:2.1.0"
     exon            76..134
                     /gene="Mbd3l1"
                     /gene_synonym="1700070G05Rik; 1700095H13Rik; Mbd3l"
                     /inference="alignment:Splign:2.1.0"
     exon            135..870
                     /gene="Mbd3l1"
                     /gene_synonym="1700070G05Rik; 1700095H13Rik; Mbd3l"
                     /inference="alignment:Splign:2.1.0"
     regulatory      843..848
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Mbd3l1"
                     /gene_synonym="1700070G05Rik; 1700095H13Rik; Mbd3l"
                     /note="hexamer: ATTAAA"
     polyA_site      870
                     /gene="Mbd3l1"
                     /gene_synonym="1700070G05Rik; 1700095H13Rik; Mbd3l"
                     /note="major polyA site"
ORIGIN      
        1 gaaggttcca agtagtccag gtagccggtt agaggtaaga tgttacagaa aagcgcaata
       61 cagaagtgat ttgagactgg caataactgt ggtatgatga tgatggcagt cttccagatt
      121 tgaagtttta caagggctaa taacggagtc agatgggcaa gacttcacag aggaaacaat
      181 gtgactgtga aaacccatca aagccttgtt taagtacttc aatccccttg aggatgtcta
      241 gttatacatt caagaggcca gtcactaaaa tcacatccca cctgggcaat gaggtaagat
      301 actatcagtg ggaggagacc ttggagaagc cagaacaagc ctgctggcag aagagacttc
      361 aaggactcca agcctacagc agtgcaggag aacttttgag cacttcagac cttgccaaga
      421 ctttgaaaga tcttacatca acagacacag ttgcgtctgc ttcagacact caagccacca
      481 gcattgacat cacatccgta cccacccttg agtcatcttc acatttggca aatatgattc
      541 cagaagcagg cccacagatc ctttgcaaag aatttctggt cactgaacag gatattatta
      601 accaggaaag gaaagtgaaa atagcaagag aaagactggc agtggcgttg attgcacaca
      661 agctagcaag tgagatggag acagtgaggg ggtcaaggaa ggcaaactta taaacataat
      721 ggggggcgga gctggggaga aatactgcag ataaaatggg gcatggtctt gttttaacac
      781 ctctttgcag tatcttttgc tgttgttttg agaccttgaa actttaaact caccaatact
      841 ttattaaaag tctttatgca atgcaaaaaa aaaaaaaaaa aaaaaaaa
//
