LOCUS       NM_001081230            6218 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus microtubule-associated protein 9 (Map9), transcript
            variant 1, mRNA.
ACCESSION   NM_001081230 XM_485258
VERSION     NM_001081230.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 6218)
  AUTHORS   Wang,S., Huang,J., Li,C., Zhao,L., Wong,C.C., Zhai,J., Zhou,Y.,
            Deng,W., Zeng,Y., Gao,S., Zhang,Y., Wang,G., Guan,X.Y., Wei,H.,
            Wong,S.H., He,H.H., Shay,J.W. and Yu,J.
  TITLE     MAP9 Loss Triggers Chromosomal Instability, Initiates Colorectal
            Tumorigenesis, and Is Associated with Poor Survival of Patients
            with Colorectal Cancer
  JOURNAL   Clin Cancer Res 26 (3), 746-757 (2020)
   PUBMED   31662330
  REMARK    GeneRIF: MAP9 Loss Triggers Chromosomal Instability, Initiates
            Colorectal Tumorigenesis, and Is Associated with Poor Survival of
            Patients with Colorectal Cancer.
REFERENCE   2  (bases 1 to 6218)
  AUTHORS   Venoux,M., Delmouly,K., Milhavet,O., Vidal-Eychenie,S., Giorgi,D.
            and Rouquier,S.
  TITLE     Gene organization, evolution and expression of the
            microtubule-associated protein ASAP (MAP9)
  JOURNAL   BMC Genomics 9, 406 (2008)
   PUBMED   18782428
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC126248.3 and AC126557.3.
            
            On Feb 6, 2007 this sequence version replaced XM_485258.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR1660817.90108.1,
                                           SRR1660817.206324.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164132
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-184               AC126248.3         26195-26378         c
            185-334             AC126248.3         25326-25475         c
            335-419             AC126248.3         24476-24560         c
            420-743             AC126248.3         20836-21159         c
            744-967             AC126248.3         13048-13271         c
            968-1061            AC126248.3         10249-10342         c
            1062-1306           AC126248.3         7283-7527           c
            1307-1377           AC126248.3         5443-5513           c
            1378-1546           AC126248.3         4204-4372           c
            1547-1636           AC126248.3         2467-2556           c
            1637-1798           AC126248.3         1081-1242           c
            1799-1944           AC126248.3         789-934             c
            1945-2077           AC126248.3         473-605             c
            2078-6218           AC126557.3         81460-85600         c
FEATURES             Location/Qualifiers
     source          1..6218
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 36.37 cM"
     gene            1..6218
                     /gene="Map9"
                     /gene_synonym="5033421J10Rik; 5330427D05Rik; ASAP; Mtap9"
                     /note="microtubule-associated protein 9"
                     /db_xref="GeneID:213582"
                     /db_xref="MGI:MGI:2442208"
     exon            1..184
                     /gene="Map9"
                     /gene_synonym="5033421J10Rik; 5330427D05Rik; ASAP; Mtap9"
                     /inference="alignment:Splign:2.1.0"
     exon            185..334
                     /gene="Map9"
                     /gene_synonym="5033421J10Rik; 5330427D05Rik; ASAP; Mtap9"
                     /inference="alignment:Splign:2.1.0"
     CDS             260..2200
                     /gene="Map9"
                     /gene_synonym="5033421J10Rik; 5330427D05Rik; ASAP; Mtap9"
                     /note="aster-associated protein"
                     /codon_start=1
                     /product="microtubule-associated protein 9"
                     /protein_id="NP_001074699.1"
                     /db_xref="CCDS:CCDS38461.1"
                     /db_xref="GeneID:213582"
                     /db_xref="MGI:MGI:2442208"
                     /translation="MSDEIFSTTLAYTKSPKATKRTSFQDELIRAITARSARQRSSEY
                     SDDFDSDEIVSLGEFSDTSTDESLVRKKMNDFHISDDEEKNSPRLSFLKTKKVNRAIS
                     NDALDSSTPGSEGSSPDAQEDVTGDSLPKSQNDDREVGREIITVKPTPRMHPVKRSTS
                     SGETSSGLDADGHFKPSPQPRSMLKKSSHTEEGVRPGVDKEHSISEASAPTPSLPRQN
                     GTELQTEEKIYSENLDLEDSLLQSLTSSSFKESPGGCTSPGSQEKVPIKDHDGEPTEI
                     WDSLLSNENEGSSVLVNCVTPELEQPKDGQVAADDLEEEREKGGFTEDDLTTDPLLST
                     SPSVITPTEPAEPAKKANEDRNTKNKKTTNNRVSSASGRLMTSEFLKRSGPTKRSPSA
                     ATSSHYLGSLKVLDQKQPRKQSLEPDKADHIRAAVYQEWLEKKNVYLHEMHRIKRIES
                     ENLRIQNEQKKAAKREEALASFEAWKAMKEKEAKRIAAKKRLEEKNKKKTEEENAMRK
                     GEALQAFEKWKEKKLEYLKEKTRREKEYERAKKQKEEEAVAEKKKDSLTAFEKWSERK
                     EALLKQKEKEKINERRKEELKRAEKKDKDKQAISEYEKWLEKKERQERIERKQKKRHS
                     FLESETHPPWSPPSRTAPSKVF"
     exon            335..419
                     /gene="Map9"
                     /gene_synonym="5033421J10Rik; 5330427D05Rik; ASAP; Mtap9"
                     /inference="alignment:Splign:2.1.0"
     exon            420..743
                     /gene="Map9"
                     /gene_synonym="5033421J10Rik; 5330427D05Rik; ASAP; Mtap9"
                     /inference="alignment:Splign:2.1.0"
     exon            744..967
                     /gene="Map9"
                     /gene_synonym="5033421J10Rik; 5330427D05Rik; ASAP; Mtap9"
                     /inference="alignment:Splign:2.1.0"
     exon            968..1061
                     /gene="Map9"
                     /gene_synonym="5033421J10Rik; 5330427D05Rik; ASAP; Mtap9"
                     /inference="alignment:Splign:2.1.0"
     exon            1062..1306
                     /gene="Map9"
                     /gene_synonym="5033421J10Rik; 5330427D05Rik; ASAP; Mtap9"
                     /inference="alignment:Splign:2.1.0"
     exon            1307..1377
                     /gene="Map9"
                     /gene_synonym="5033421J10Rik; 5330427D05Rik; ASAP; Mtap9"
                     /inference="alignment:Splign:2.1.0"
     exon            1378..1546
                     /gene="Map9"
                     /gene_synonym="5033421J10Rik; 5330427D05Rik; ASAP; Mtap9"
                     /inference="alignment:Splign:2.1.0"
     exon            1547..1636
                     /gene="Map9"
                     /gene_synonym="5033421J10Rik; 5330427D05Rik; ASAP; Mtap9"
                     /inference="alignment:Splign:2.1.0"
     exon            1637..1798
                     /gene="Map9"
                     /gene_synonym="5033421J10Rik; 5330427D05Rik; ASAP; Mtap9"
                     /inference="alignment:Splign:2.1.0"
     exon            1799..1944
                     /gene="Map9"
                     /gene_synonym="5033421J10Rik; 5330427D05Rik; ASAP; Mtap9"
                     /inference="alignment:Splign:2.1.0"
     exon            1945..2077
                     /gene="Map9"
                     /gene_synonym="5033421J10Rik; 5330427D05Rik; ASAP; Mtap9"
                     /inference="alignment:Splign:2.1.0"
     exon            2078..6218
                     /gene="Map9"
                     /gene_synonym="5033421J10Rik; 5330427D05Rik; ASAP; Mtap9"
                     /inference="alignment:Splign:2.1.0"
     regulatory      6197..6202
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Map9"
                     /gene_synonym="5033421J10Rik; 5330427D05Rik; ASAP; Mtap9"
                     /note="hexamer: AATAAA"
     polyA_site      6216
                     /gene="Map9"
                     /gene_synonym="5033421J10Rik; 5330427D05Rik; ASAP; Mtap9"
                     /note="major polyA site"
ORIGIN      
        1 gttgggtacc caagagacca ggcggttgga agtcacttcc tcccggggac gctgttgcct
       61 agcaaccgcc ttctgcctcc atcttttgcc ccgcctccag gttattccaa tacctggttt
      121 cccagaccgc gaggcccggg ccgggggcga cacctgtgct agagcatagc cgctgggttc
      181 tcagccacca tcagaggttg aatgaattat ttcagtaatt tattaactgt tgtataaaag
      241 cagagaaaaa ggacacacca tgtccgatga aatcttcagc acaactttgg cgtacaccaa
      301 gagtccaaag gctaccaaga gaacttcctt tcaggatgag ctgatcagag ccattacagc
      361 ccggtcagcc aggcagagaa gttccgaata ctccgatgac tttgacagtg acgagattgt
      421 ttctttaggt gaattttcag atacctcgac agatgaaagt ctagttagaa aaaagatgaa
      481 tgattttcat atatccgacg atgaggaaaa aaattctcca agactgtctt ttttgaaaac
      541 caagaaagta aacagggcaa tatccaacga tgctctggac tccagcactc cgggcagcga
      601 aggctcgtca ccggatgctc aagaagatgt gactggagat tccctcccca aatctcaaaa
      661 tgatgatcga gaagtcggca gagagatcat cacagtgaag cctacaccca ggatgcaccc
      721 cgtcaaaaga agcacgtcct cgggggaaac cagcagcggt cttgatgcag atggccactt
      781 taagccttca ccccagccaa ggagcatgtt aaaaaagagc agccacactg aggagggagt
      841 cagaccagga gttgataaag aacattccat aagcgaagcc tctgctccca caccttccct
      901 tccaaggcag aatggcacag agttgcaaac tgaggaaaaa atatactcgg aaaacctcga
      961 tcttgaggac tcactcttac aaagtctgac ctcatcttcc ttcaaagaaa gccccggagg
     1021 ttgcacatca ccaggatctc aggaaaaggt gcccataaaa gatcatgatg gagaacctac
     1081 tgaaatctgg gattccttgc tatcaaatga aaatgaagga agttctgttt tggtgaactg
     1141 tgttactcct gaactcgagc agcccaagga cggtcaggtg gcagctgacg accttgagga
     1201 agaaagagag aagggtggat ttacagaaga tgacctcacc actgacccgc tgctctccac
     1261 gtccccgagt gtcataacac ccactgagcc agcagagccg gccaagaaag caaatgaaga
     1321 cagaaacacg aagaataaaa agacaacgaa taacagagtg tccagtgcct ctggcaggct
     1381 gatgacctct gagtttttaa agagatccgg tcccacaaaa agaagtccat ctgcagctac
     1441 ctcctcacac tatttaggga gtttgaaagt cttggaccag aagcaaccac ggaagcagag
     1501 cctagagcca gacaaggctg atcacataag ggcagctgtt tatcaggagt ggttagaaaa
     1561 gaaaaatgtg tatttacatg aaatgcacag aataaaaaga attgaaagcg aaaacttgag
     1621 gatccaaaat gaacagaaaa aagctgctaa gagagaggaa gccctggcat catttgaggc
     1681 ctggaaggca atgaaagaga aggaagcaaa gagaatagct gcaaaaaaga ggctggagga
     1741 aaagaacaag aagaaaacag aagaagaaaa tgccatgagg aaaggcgagg ccctgcaagc
     1801 atttgaaaaa tggaaagaga aaaagctaga atacctcaaa gagaagacca ggagggagaa
     1861 agaatatgaa agagcaaaga aacagaaaga agaggaagcg gttgctgaga aaaagaaaga
     1921 cagtttaact gcttttgaaa aatggagtga gagaaaggaa gctctcctca agcaaaagga
     1981 gaaggagaaa ataaatgaga gaagaaagga agagctgaag agagccgaga agaaagacaa
     2041 agacaagcaa gccatcagtg aatacgaaaa gtggctggaa aagaaagaaa ggcaagaaag
     2101 aattgaacgg aaacagaaga agcgccactc cttccttgag agcgagacac acccaccatg
     2161 gagtcctccg agcagaactg cgccctcaaa agtattttga tgtttctggt tcttgatttt
     2221 tttttcagtt caccaactgt actcatggat ttaaaacgag tcatctcatt atttgtggtt
     2281 agaagactct atgtcacttc cctgcaggag cttctgtgga gcatgaaaga gatactttgc
     2341 agtttaatca gtggaaacat tttctgaagt gtcctcatca gtttgctggg acaatccaga
     2401 cgcatgaagc tttattatga cctgaacagt ctggtgtggg gtgattcgtg gtcactgtcg
     2461 ctgagttcgg agtcttttta aagaatgttt gatcccacta atgaaagaat gccagctaga
     2521 taccacaatc gtagagatga ctcggtctgt ggaagtctgt gcttctagag tgtagtttgg
     2581 gcattgaagg tccctggaga ccatgggcat gttatctctt ctaactccag ttcttcaggt
     2641 cacagaagta tctttgctgt gcaagttatc gactcagtca gttgaggcca cagaactcta
     2701 gtcagtcact ttagtaaaga actttgccat agggtttaat ctcggtgtgg tttgccttct
     2761 tgaggcttac ctgacaatcg tagccacctc tataatgggc tcacttctgg aatgttcttt
     2821 ctaaagccca tctcaatatc tttattattt gattgacacc aaaatcagtt tgatggtagt
     2881 gttttcttat agagtagttg tgaaaacttc aaggtgacta tcaaagtttt tctagactaa
     2941 agttataaag gtaatgaaaa taactcccat tttcttaact aattaagact ggttcaacct
     3001 gcatatggaa gcggttgaat gagaaagtaa atttgtaaaa atattcaaga ttgtttattt
     3061 atttattatt tatttattta tttgaccttt acttctccct gtatcaactg gtcctatact
     3121 tgactggcca tctcttaaaa cagacaaatt gttgggatgc tgctgtaggc aatcatgcaa
     3181 tgcagagaca atcaatggaa aacctagttg ctatggttct cttagctctt atgtcatctc
     3241 tgctggacct ttatagatgc gatttgtcaa ctttgttgga gctgttcagg gtagctatta
     3301 ctagctttat tgtgcagata aaaagactgg gacttaggaa gtccaaacta acttgccatt
     3361 cagctaacat gtgagtggtg gggaccagaa cttcacatct cccttgaagc ctatgtgacc
     3421 tcagagactg tgaccttgca aatgcttgtc actcccaagg gtgtaaagtc aggcaatgtt
     3481 ggttggacat gcccattttc ttacatctat aaaatgaaat aaggattcat gggatttaag
     3541 gtattcatca catatctaat aaataccaac aaagccagca gcttgtgtta agacccacta
     3601 agcagtattg aatcgtggga tgtgcacaaa acaggatgtc atgagctgct tcgcagcatc
     3661 acggagcaga tggactcaca tacaagactg ccagaagtgg tcactgaaag cattatcagc
     3721 agtgtgctgt ctgtctggga ttcaggactc acatttgtgt ggtttcctac aactgcaaac
     3781 aatcaagcct gcgagaatag agtgataagg gaatcttgaa gtaaattgga agcgataaaa
     3841 aaaaaatgtt tgcacattgt aaggaactca aaggaagatg agacaaaggt gtagctgctt
     3901 ctagggatca gaaaccacca ggtgtgcact tccactcccg gacaactttc tacagtgttg
     3961 tgtttgttac cgctgttagc gcctaactaa atcatgtcga atggccgatt taagtcatct
     4021 aaagtatttg ggacataagg acttagtaaa cattcattgt tatcatttat ttactacatc
     4081 tccccaccac ggacatgtgg gatgagtaga acagtagtca cttggcctac atttgtggca
     4141 tacagaaaaa ctcagtctgc tggtccatct ctgacttacc tgtcaccggc aagcactgcc
     4201 tgagacagga ccctctgaga agacaactcc atactgcttt cttgagatcg cctctgaaga
     4261 gaatgaagtg accaatgaag atgagcccaa tgggcccaaa gccatttcct caaacgtgat
     4321 ttaggatggg tctatttata gagcaagtaa tagttttctc ccctaaactt aacctgtact
     4381 caacctgtgc gggatttatg gttaaatcag atttgaccct ttctactgca gtgaatgtag
     4441 agcagagctt tggacagtgg gtgcgcatcc agttctggaa tgtggcagtc tgaattacag
     4501 aggaaagaag caagcctggt gagatggtcc taatatgttt gcctatttaa gaaataagac
     4561 ttcttctgca tttccttcaa aagtaccaaa tatcaatata gatttataaa taataataaa
     4621 caaaactctg acgtgaaagt tagttccata gtagcaaaaa gatagcacac acattacaag
     4681 gaataaaacg gttctttaga agagttcaag tttccttaag gaaatctgcc aagaacagct
     4741 cggataacag tattccagca gcctgcgcgt cacacttgga ggtgccggtt cactagttgg
     4801 tttaggctgt aaagatagca gcggggttta ctgttttgct gctggtttta ctgacaaagc
     4861 actaccttgt aggagcttga cagctacagc tggatgttcc ttggcgtgat gtagcttgta
     4921 ctcaatctgg actagataga ctctatttct atgttgagtc acctgatgcc caacactttt
     4981 gaatttgcca acctcaaatg cctagagtta tcctcgaggc tggcagtggg ccctttgccc
     5041 atcttcccac aggtgtggcc cactcatgct cacaccaact tcgtttagct gtggttattg
     5101 ttcctggggc tgcttgttac tgtctcccat tccccctttc tccccagcct tccaggggaa
     5161 gcagctgttt ggcttctcac actgctctga gaaaacagtg cacttaaatc ctaagtcatg
     5221 gcctaaaaaa aacccaacag agacaggaag tttctcagat caggggaaag gaaaagtgca
     5281 tgctagtcaa aattagtctc aaaaataaga tagtacagga accaaaattg cctaatttca
     5341 cttgactctt agttcaattg tactgtacaa aaaggcattt aaaaacccag gtgtgtccat
     5401 tctacacaaa gcaaatctgt tattgatttt cttcattcct agttacactg actgatagaa
     5461 ttgtgaagtg ctctgtgggt gcagaacagg aggctttttc aagccctttt acttagacat
     5521 gtcatgtgat actgctcttt tggaatgctg tgctacacgt agtggtaatt gtataaggtt
     5581 aatcagagta cgtgaaattc ttggtgctga atttaggatg tctttgagat tgttggggaa
     5641 atacatttta tgcctgctcc ttagtactac agttttgttt tatacttaat ttattcaagt
     5701 tagccatttt cagtttagtt tattgagtgt tataatttat tacctatata ccaggtgtta
     5761 ataagtaaga tgtgtgttta tttctgagct aaagataaaa tatgtcatgt tgatatatct
     5821 ttcactggaa atgaatggtg gacaggaagg aattttcaac ttaaggtttg gatatgaaac
     5881 tgattttact gtatggattg caaatatgac ataataacta aattgttagt aatattgcta
     5941 cgttgattgt aaactgcaga tgagtgaggt cacatgtttc catctctccg cgatgactgc
     6001 gtgcggttaa tgcggtattt ccactcacct gtctattttc tagtgagttc tctggtgttg
     6061 ctgggaataa gggggtgaag gaaggagctc ctattctagt ctgctagttc tctgtctctc
     6121 gcctctccct gtcttctatg ttccttacat gtatatacat atatgtatgt gtttataata
     6181 ggtatctgat cattggaata aaatgaactc aagccaca
//
