LOCUS       XM_036154648            5680 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus microtubule-associated protein 4 (Map4),
            transcript variant X5, mRNA.
ACCESSION   XM_036154648
VERSION     XM_036154648.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000075.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Mar 6, 2024 this sequence was replaced by
            NM_001428289.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5680
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="9"
     gene            1..5680
                     /gene="Map4"
                     /gene_synonym="MAP-4; Mtap-4; Mtap4"
                     /note="microtubule-associated protein 4; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 6 mRNAs, 79 ESTs, 3530 long SRA reads, 7 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 32 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:17758"
                     /db_xref="MGI:MGI:97178"
     CDS             508..3720
                     /gene="Map4"
                     /gene_synonym="MAP-4; Mtap-4; Mtap4"
                     /codon_start=1
                     /product="microtubule-associated protein 4 isoform X5"
                     /protein_id="XP_036010541.1"
                     /db_xref="GeneID:17758"
                     /db_xref="MGI:MGI:97178"
                     /translation="MADLSLVDALTEPPPEIEGEIKRDFMAALEAEPYDDIVGETVEK
                     TEFIPLLDGDEKTGNSESKKKPCLDTSQVEGIPSSKPTLLANGDHGMEGNNTAGSPTD
                     FLEERVDYPDYQSSQNWPEDASFCFQPQQVLDTDQAEPFNEHRDDGLADLLFVSSGPT
                     NASAFTERDNPSEDSYGMLPCDSFASTAVVSQEWSVGAPNSPCSESCVSPEVTIETLQ
                     PATELSKAAEVESVKEQLPAKALETMAEQTTDVVHSPSTDTTPGPDTEAALAKDIEEI
                     TKPDVILANVTQPSTESDMFLAQDMELLTGTEAAHANNIILPTEPDESSTKDVAPPME
                     EEIVPGNDTTSPKETETTLPIKMDLAPPEDVLLTKETELAPAKGMVSLSEIEEALAKN
                     DESSAEIPVAQETVVSETEVVLATEVVLPSDPITTLTKDVTLPLEAERPLVTDMTPSL
                     ETEMTLGKETAPPTETNLGMAKDMSPLPESEVTLGKDVVILPETKVAEFNNVTPLSEE
                     EVTSVKDMSPSAETEAPLAKNADLHSGTELIVDNSMAPASDLALPLETKVATVPIKDK
                     GTVQTEEKPREDSQLASMQHKGQSTVPPCTASPEPVKAAEQMSTLPIDAPSPLENLEQ
                     KETPGSQPSEPCSGVSRQEEAKAAVGVTGNDITTPPNKEPPPSPEKKAKPLATTQPAK
                     TSTSKAKTQPTSLPKQPAPTTSGGLNKKPMSLASGSVPAAPHKRPAAATATARPSTLP
                     ARDVKPKPITEAKVAEKRTSPSKPSSAPALKPGPKTTPTVSKATSPSTLVSTGPSSRS
                     PATTLPKRPTSIKTEGKPADVKRMTAKSASADLSRSKTTSASSVKRNTTPTGAAPPAG
                     MTSTRVKPMSAPSRSSGALSVDKKPTSTKPSSSAPRVSRLATTVSAPDLKSVRSKVGS
                     TENIKHQPGGGRVQIVSKKVSYSHIQSKCGSKDNIKHVPGGGNVQIQNKKVDISKVSS
                     KCGSKANIKHKPGGGDVKIESQKLNFKEKAQAKVGSLDNVGHLPAGGAVKIETYRLTF
                     RANARARTDHGADIVSRPPHFPGGPSLGSRALGSFSRAVY"
ORIGIN      
        1 agggccggcg gggcccactc aggcccaccc gtacgcaggc gcgtgcgcct gacactagca
       61 tcctttctgc tggaaaagga agcggcggcc ctctcagaac ggcggaggcg gcctgagcct
      121 cgccattcgc tgaggcatcc gcgggcggga ggccgcagtc tagacccccg acgcgcgccg
      181 cgccaacggt ccgccactcg tgctgcttcc acggagaggg cgaggagtag gggccggcgt
      241 ggattggttc gcggcgcctc ggcccgccct tcggtggcgc ccattggctg gggcggcacc
      301 cgctgacggc gagcacgctc cgccttcgtg ccggccttca agagggcgac gaggaagcgg
      361 ccacctccct gtgccccgcc cctccggcta ggtctgtggc ttctgcggct cctcccggct
      421 gctcccggct cctctctgcc ctctcccggc ttcctgcggc tccggcttgg gctcggcggc
      481 ggcggcgggc agtcgcagtg gtacagaatg gccgacctca gtcttgtgga tgcgttgaca
      541 gaaccacctc cagaaattga gggagaaata aagcgagact tcatggctgc gctggaggca
      601 gagccctatg atgacatcgt gggagaaact gtggagaaaa ctgagtttat tcctctcctg
      661 gatggtgatg agaaaaccgg gaactcagag tccaaaaaga aaccctgctt agacactagc
      721 caggttgaag gtatcccatc ttctaaacca acactcctag ccaatggtga tcatggaatg
      781 gaggggaata acactgcagg gtctccaact gacttccttg aagagagagt ggactatccg
      841 gattatcaga gcagccagaa ctggccagaa gatgcaagct tttgtttcca gcctcagcaa
      901 gtgttagata ctgaccaggc tgagcccttt aacgagcacc gtgatgatgg tttggcagat
      961 ctgctctttg tctccagtgg acccacgaac gcttctgcat ttacagagcg agacaatcct
     1021 tcagaagaca gttacggtat gcttccctgt gactcatttg cttccacggc tgttgtatct
     1081 caggagtggt ctgtgggagc cccaaactct ccatgttcag agtcctgtgt ctccccagag
     1141 gttactatag aaaccctaca gccagcaaca gagctctcca aggcagcaga agtggaatca
     1201 gtgaaagagc agctgccagc taaagcattg gaaacgatgg cagagcagac cactgatgtg
     1261 gtgcactctc catccacaga cacaacacca ggcccagaca cagaggcagc actggctaaa
     1321 gacatagaag agatcaccaa gccagatgtg atattggcaa atgtcacgca gccatctact
     1381 gaatcggata tgttcctggc ccaggacatg gaactactca caggaacaga ggcagcccac
     1441 gctaacaata tcatattgcc tacagaacca gacgaatctt caaccaagga tgtagcacca
     1501 cctatggaag aagaaattgt cccaggcaat gatacgacat cccccaaaga aacagagaca
     1561 acacttccaa taaaaatgga cttggcacca cctgaggatg tgttacttac caaagaaaca
     1621 gaactagccc cagccaaggg catggtttca ctctcagaaa tagaagaggc tctggcaaag
     1681 aatgatgagt cctctgcaga aatacctgtg gctcaggaga cagtggtctc agaaacagag
     1741 gtggtcctgg caacagaagt ggtactgccc tcagatccca taacaacatt gacaaaggat
     1801 gtgacactcc ccttagaagc agagagaccg ttggtgacgg acatgactcc atctctggaa
     1861 acagaaatga ccctaggcaa agagacagct ccacccacag aaacaaattt gggcatggcc
     1921 aaagacatgt ctccactccc agaatcagaa gtgactctgg gcaaggacgt ggttatactt
     1981 ccagaaacaa aggtggctga gtttaacaat gtgactccac tttcagaaga agaggtaacc
     2041 tcagtcaagg acatgtctcc gtctgcagaa acagaggctc ccctggctaa gaatgctgat
     2101 ctgcactcag gaacagagct gattgtggac aacagcatgg ctccagcctc cgatcttgca
     2161 ctgcccttgg aaacaaaagt agcaacagtt ccaattaaag acaaaggaac tgtacagact
     2221 gaagaaaaac cacgtgaaga ctcccagtta gcatctatgc agcacaaggg acagtcaaca
     2281 gtacctcctt gcacggcttc accagaacca gtcaaagctg cagaacaaat gtctacctta
     2341 ccaatagatg caccttctcc attagagaac ttagagcaga aggaaacgcc tggcagccag
     2401 ccttctgagc cttgctcagg agtatcccgg caagaagaag caaaggctgc tgtaggtgtg
     2461 actggaaatg acatcactac cccgccaaac aaggagccac caccaagccc agaaaagaaa
     2521 gcaaagcctt tggccaccac tcaacctgca aagacttcaa catcgaaagc caaaacacag
     2581 cccacttctc tccctaagca accagctccc accacctctg gtgggttgaa taaaaaaccc
     2641 atgagcctcg cctcaggctc agtgccagct gccccacaca aacgccctgc tgctgccact
     2701 gctactgcca ggccttccac cctacctgcc agagacgtga agccaaagcc aattacagaa
     2761 gctaaggttg ccgaaaagcg gacctctcca tccaagcctt catctgcccc agccctcaaa
     2821 cctggaccta aaaccacccc aaccgtttca aaagccacat ctccctcaac tcttgtttcc
     2881 actggaccaa gtagtagaag tccagctaca actctgccta agaggccaac cagcatcaag
     2941 actgagggga aacctgctga tgtcaaaagg atgactgcta agtctgcctc agctgacttg
     3001 agtcgctcaa agaccacctc tgccagttct gtgaagagaa acaccactcc cactggggca
     3061 gcacccccag cagggatgac ttccactcga gtcaagccca tgtctgcacc tagccgctct
     3121 tctggggctc tttctgtgga caagaagccc acttccacta agcctagctc ctctgctccc
     3181 agggtgagcc gcctggccac aactgtttct gcccctgacc tgaagagtgt tcgctccaag
     3241 gtcggctcta cagaaaacat caaacaccag cctggaggag gccgggtcca gatagtatcc
     3301 aaaaaagtga gctacagcca tattcaatcc aagtgtggtt ccaaggacaa tattaagcat
     3361 gtccctggag gtggcaatgt tcagattcag aacaagaaag tggacatatc caaggtctcc
     3421 tccaagtgtg ggtccaaagc taatatcaag cacaagcctg gtggaggaga tgtcaagatt
     3481 gaaagtcaga agttgaactt caaggagaag gcccaagcca aagtgggatc ccttgataac
     3541 gtgggccact tgcctgcagg aggtgccgtg aagattgaga cctacaggct gacgttccgg
     3601 gcaaatgcca gggcccgcac cgaccatggg gctgacattg tctcccggcc tccccacttc
     3661 cctggtggcc caagcttggg gtctcgagcc ctgggctcct tttcccgggc tgtctactag
     3721 acttgtaagc tcttgggtgc tgggcagccc ctttaggcct ccctccctcc tgcctcgctt
     3781 gctcaaggca gcagcagccc cactcgctgc cattacacct ccttccaccc ctttctgggc
     3841 caactccaac ttcactatct caccacttca ccactgcacc acggagaaag ttgggcgggg
     3901 acgggagtcc agtgggatct ctgtgggatc taggggtgag gagctggatt ccagccttgg
     3961 ctgtttggtt tttttggacc aaacccaaaa gaaactgaca aacctctctt ccctggctca
     4021 acctggaggg actggtaaag gtgaactcca cgtggagacc agcaccgact gaatccctgg
     4081 aacctaaacc actccttgac cccacggggt ggaagccacc atttggtggt accaggccct
     4141 tttgctgcct cacctcaagt tagtcaagga tcagtcctcc ttgtccccac gacttatcgt
     4201 acctgagtag ctgctgtctc acttttttat tctttcctct cccaataacc tatgaactgg
     4261 tggtgtagtt tgcaggctga agccatgtct aaatgagagt tcttggtagg tggtgaggga
     4321 agtggggaag gagatcccga gtctccactg aggaggctgt cagatattgg cgggggttgc
     4381 cctactctgg gcagcttggg ccctgcagga agaagtgaag tcagacagct agggtgggtc
     4441 agtgtggctg attgtgttgg tattgtgtgt atgctgcttt tctaaccaag aggctggttt
     4501 tggcatctat ctcattccct gggaatgcgg tggttaaatg tgtgatacaa aatcagggct
     4561 ggagaaacag aaatgaaggt caaaatcgct ggcctgtacc tacaggccat agcacccaaa
     4621 tcctcatatc taggggagcc tgaaatgtcc agaacgcttg tgaacagtgg ggaatcaggt
     4681 gtgaaaattt aaaactaaaa tgcatgagac tgaggccatc cagtcttctg gtgtggcggg
     4741 agaggtggag ccatggtggt gcagccatcc cagcgtggtc tgctcatgga tgggatggtt
     4801 gcaatgttga gaaaatcccg ggaattttat caacacaaga ttcttattgc acttgtattt
     4861 tttgtattaa agtttgcatg gtttctaata aaggattcaa acctaagttt gtattgaaat
     4921 ggcctgggag tgtctaaggg ctcctctgat agggcatttt ctgctgggca gatttgcctc
     4981 tcaggaggct ggcccagact tggtcccctt ggccctcctc cgaacagact ctgcctttgc
     5041 ttgggtacag tttgaggagg tagaggtctt tactctctct ctgccaaggg aaggtatccc
     5101 tgggcttgaa ggtcttctcc atttatgagg tagcagttac tttgtgataa tcttgacact
     5161 gaatccctag ctctctaagc acacacaaag aattgctggg acctgtggaa aaaagactgc
     5221 ctgagctggg gagtggcttt cttcccaagc tgtcagaact aagcttggag cctgcattgt
     5281 ctgtattttg cagcaatagg ggcccacgga gctgggaagg acacagtggg gaccagggta
     5341 gtgatgactg agcgtataca ggtacttgct accctccttg atgttgatct tagggccttg
     5401 aagatgctaa ggaaattgac aagaaacaag tccattggcc aaggattaga gaaaggaagg
     5461 taacccaagc tctgtaggta gctccctgga aggatcccac gagccagaga acctgagaag
     5521 gctggtctag cagcttggga ccacaggcca tgtgatgtgc atacttcaaa atgtttggga
     5581 ataaggtcct tctgtatttt atagtttgct catggcttag ccattaccca tgtctgtaat
     5641 tgttgtactg atttaaacaa taaagctgcc tgacatccca
//
