LOCUS       NM_144854               1662 bp    mRNA    linear   ROD 14-JUN-2024
DEFINITION  Mus musculus Map3k7 C-terminal like (Map3k7cl), transcript variant
            1, mRNA.
ACCESSION   NM_144854 XM_977844
VERSION     NM_144854.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1662)
  AUTHORS   Yokoyama,S., Ito,Y., Ueno-Kudoh,H., Shimizu,H., Uchibe,K.,
            Albini,S., Mitsuoka,K., Miyaki,S., Kiso,M., Nagai,A., Hikata,T.,
            Osada,T., Fukuda,N., Yamashita,S., Harada,D., Mezzano,V., Kasai,M.,
            Puri,P.L., Hayashizaki,Y., Okado,H., Hashimoto,M. and Asahara,H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
REFERENCE   2  (bases 1 to 1662)
  AUTHORS   Gitton,Y., Dahmane,N., Baik,S., Ruiz i Altaba,A., Neidhardt,L.,
            Scholze,M., Herrmann,B.G., Kahlem,P., Benkahla,A., Schrinner,S.,
            Yildirimman,R., Herwig,R., Lehrach,H. and Yaspo,M.L.
  CONSRTM   HSA21 expression map initiative
  TITLE     A gene expression map of human chromosome 21 orthologues in the
            mouse
  JOURNAL   Nature 420 (6915), 586-590 (2002)
   PUBMED   12466855
REFERENCE   3  (bases 1 to 1662)
  AUTHORS   Reymond,A., Marigo,V., Yaylaoglu,M.B., Leoni,A., Ucla,C.,
            Scamuffa,N., Caccioppoli,C., Dermitzakis,E.T., Lyle,R., Banfi,S.,
            Eichele,G., Antonarakis,S.E. and Ballabio,A.
  TITLE     Human chromosome 21 gene expression atlas in the mouse
  JOURNAL   Nature 420 (6915), 582-586 (2002)
   PUBMED   12466854
REFERENCE   4  (bases 1 to 1662)
  AUTHORS   Reymond,A., Friedli,M., Henrichsen,C.N., Chapot,F., Deutsch,S.,
            Ucla,C., Rossier,C., Lyle,R., Guipponi,M. and Antonarakis,S.E.
  TITLE     From PREDs and open reading frames to cDNA isolation: revisiting
            the human chromosome 21 transcription map
  JOURNAL   Genomics 78 (1-2), 46-54 (2001)
   PUBMED   11707072
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC154631.2 and CT025527.7.
            
            On Feb 24, 2023 this sequence version replaced NM_144854.2.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY033899.1, AK041664.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-276               AC154631.2         23116-23391         c
            277-385             AC154631.2         20701-20809         c
            386-447             AC154631.2         6352-6413           c
            448-563             CT025527.7         100795-100910
            564-1662            CT025527.7         113903-115001
FEATURES             Location/Qualifiers
     source          1..1662
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="16"
                     /map="16 49.58 cM"
     gene            1..1662
                     /gene="Map3k7cl"
                     /gene_synonym="C21orf7; ORF63; Tak1l"
                     /note="Map3k7 C-terminal like"
                     /db_xref="GeneID:224419"
                     /db_xref="MGI:MGI:2446584"
     exon            1..276
                     /gene="Map3k7cl"
                     /gene_synonym="C21orf7; ORF63; Tak1l"
                     /inference="alignment:Splign:2.1.0"
     exon            277..385
                     /gene="Map3k7cl"
                     /gene_synonym="C21orf7; ORF63; Tak1l"
                     /inference="alignment:Splign:2.1.0"
     CDS             316..744
                     /gene="Map3k7cl"
                     /gene_synonym="C21orf7; ORF63; Tak1l"
                     /note="TAK1-like protein"
                     /codon_start=1
                     /product="MAP3K7 C-terminal-like protein"
                     /protein_id="NP_659103.1"
                     /db_xref="CCDS:CCDS28292.1"
                     /db_xref="GeneID:224419"
                     /db_xref="MGI:MGI:2446584"
                     /translation="MISTARVPADKPVRIAFSLNDAPDDTPSEDAIPLVFPELEQQLQ
                     PLPPCHDSVESMQVFKQHCQIAEEYHEVKKEIALLEERKKELIAKLDQAEKEKLDAAQ
                     LVQEFEALTEENRTLKMAQSQCVEQLENLRIQYQKRQGSS"
     exon            386..447
                     /gene="Map3k7cl"
                     /gene_synonym="C21orf7; ORF63; Tak1l"
                     /inference="alignment:Splign:2.1.0"
     exon            448..563
                     /gene="Map3k7cl"
                     /gene_synonym="C21orf7; ORF63; Tak1l"
                     /inference="alignment:Splign:2.1.0"
     exon            564..1662
                     /gene="Map3k7cl"
                     /gene_synonym="C21orf7; ORF63; Tak1l"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1640..1645
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Map3k7cl"
                     /gene_synonym="C21orf7; ORF63; Tak1l"
                     /note="hexamer: ATTAAA"
     polyA_site      1662
                     /gene="Map3k7cl"
                     /gene_synonym="C21orf7; ORF63; Tak1l"
                     /note="major polyA site"
ORIGIN      
        1 atgacaacat cctggctgtc ggagtggcaa ggaaaggaga gaggggctat gcgaggaagc
       61 ggaacaggga ggtcccgtgg gatgggacag tggggtccgg ggcagagcag gtagtgtgca
      121 gcctgggcag ctgtctctgc tcctcagagt gtcggtggct gctatgcagc aggtgcagac
      181 tgctctctcg ctgagtcttg actgcacaaa ctcaacgact ggccaaggca gtggctggcc
      241 ctggattaca caagcgcaga ctctcaacta agtgagctgg aagacccagg agaaggccgg
      301 gcctcaggtg cccacatgat cagcacagcc cgggtacctg cagataagcc agttcgcatc
      361 gcgtttagcc tcaatgatgc cccagatgat acaccatctg aagatgccat tcctttggtc
      421 ttcccagagt tagagcagca gctccagcct ctgccgccgt gtcacgactc cgtagagtcc
      481 atgcaggtgt ttaaacagca ctgccaaata gcagaagagt accatgaagt caaaaaagag
      541 atcgccttgc ttgaggaaag gaagaaggag ctcattgcca agctggacca ggcagaaaag
      601 gagaagctgg acgctgctca gctggttcag gaatttgagg ctctgacgga ggagaaccgg
      661 acgctgaaga tggcccagtc tcagtgtgta gagcaactgg aaaacctcag aatccagtat
      721 cagaagaggc agggctcctc ctaacgtcag cccgtgaaat gtgagccagg ttgctgaccg
      781 ccatgagctg gccaaaagga tttgcatctt aaggaacaga gagtaaaatc tattgctttt
      841 ctttattaac catatggcaa atgtctagaa tgagtttagt gctgcctagt ttctagcttg
      901 agagagggat attttatttt aagtgaggtc attaatgcaa agctatcaac agtatatatt
      961 ttcagagatc agagtccttt tttcatatat atatatatcc acaccccccc acacacacat
     1021 ttatcttagt tagaaagtta tgataatact atacattaaa gtaggaaata ataaaaatag
     1081 aatattgact ggtcccacag aaaatcatga gccgtaaaac aagccagtag ggtgttcact
     1141 gtcatttcac atctgtgcat tttaaaattt tatgcctttt catatttcaa gtccgctcag
     1201 ttacaaacca tgggggctag ctgtgttcgg tagagtcaga tgtaactctt cttcggtgac
     1261 tgattgtcct aagaacaaat ggttgcagag cctaaatgct ttcttgtgaa aatatcagca
     1321 ggcgtgtgtc cttgcccaaa cctcactgct cagtgctgat ctgtgtaatg aagaatcaag
     1381 gctggctata tcaaggctgg ctatgctttt tttccccttt gtgttagcac acagtggtca
     1441 catttgcctt ggccgtgtgt gtctttggga tctgggcatg cggaaagtgg aaagctacct
     1501 atcgttcaga cacaccgttg agtgaatgca gaattagcgc gctctccctt agctccatct
     1561 cccacactcc cccccccccc gtcccccccc ccccccgtct ttgttttgta tctgtttcca
     1621 gtcacgtgac ttctttttca ttaaacgtgg atccaaagtg ca
//
