LOCUS       NM_027512               1649 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus MAGE family member A9 (Magea9), mRNA.
ACCESSION   NM_027512 XM_135882
VERSION     NM_027512.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1649)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1649)
  AUTHORS   Ingham,N.J., Pearson,S.A., Vancollie,V.E., Rook,V., Lewis,M.A.,
            Chen,J., Buniello,A., Martelletti,E., Preite,L., Lam,C.C.,
            Weiss,F.D., Powis,Z., Suwannarat,P., Lelliott,C.J., Dawson,S.J.,
            White,J.K. and Steel,K.P.
  TITLE     Mouse screen reveals multiple new genes underlying mouse and human
            hearing loss
  JOURNAL   PLoS Biol 17 (4), e3000194 (2019)
   PUBMED   30973865
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1649)
  AUTHORS   Liakath-Ali,K., Vancollie,V.E., Heath,E., Smedley,D.P., Estabel,J.,
            Sunter,D., Ditommaso,T., White,J.K., Ramirez-Solis,R., Smyth,I.,
            Steel,K.P. and Watt,F.M.
  TITLE     Novel skin phenotypes revealed by a genome-wide mouse reverse
            genetic screen
  JOURNAL   Nat Commun 5, 3540 (2014)
   PUBMED   24721909
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK049539.1 and AL807820.4.
            
            On Oct 21, 2009 this sequence version replaced NM_027512.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK049539.1, BC068255.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384, SAMN01164133
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1619              AK049539.1         2-1620
            1620-1649           AL807820.4         78358-78387
FEATURES             Location/Qualifiers
     source          1..1649
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 34.57 cM"
     gene            1..1649
                     /gene="Magea9"
                     /gene_synonym="3830417A13Rik"
                     /note="MAGE family member A9"
                     /db_xref="GeneID:70696"
                     /db_xref="MGI:MGI:1917946"
     exon            1..144
                     /gene="Magea9"
                     /gene_synonym="3830417A13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            145..230
                     /gene="Magea9"
                     /gene_synonym="3830417A13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            231..301
                     /gene="Magea9"
                     /gene_synonym="3830417A13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            302..1649
                     /gene="Magea9"
                     /gene_synonym="3830417A13Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             312..1223
                     /gene="Magea9"
                     /gene_synonym="3830417A13Rik"
                     /codon_start=1
                     /product="uncharacterized protein LOC70696"
                     /protein_id="NP_081788.2"
                     /db_xref="CCDS:CCDS30166.1"
                     /db_xref="GeneID:70696"
                     /db_xref="MGI:MGI:1917946"
                     /translation="MEPTENNQNFNLWDIPRAQTEERGPGSTQDPIAEAEEVEAIATA
                     PGDVPAGGTPSSPQSAQGDPSPPTAMGSISGASFENPLSEVSGAESPSQDGLNEKIID
                     LVRFLLVKFRRMELTNKEEMIVKTMGDYEEHYSVIFSKAAECMKLIFGVDMLEVDPFV
                     HSYFLHPALGITYDGMLHGVIGVPKTGLVILVLCVIFIENNCVREEVFWHAMNILGMQ
                     AGIDHFIFGEPRSLITEDFVEEGYVEYRQVPNSNPPCFEFLWGARAYAETTKMKILEF
                     YASIVRQDPRSYPEKYAEALREEQERA"
     regulatory      1613..1618
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Magea9"
                     /gene_synonym="3830417A13Rik"
                     /note="hexamer: CATAAA"
     regulatory      1625..1630
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Magea9"
                     /gene_synonym="3830417A13Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1636
                     /gene="Magea9"
                     /gene_synonym="3830417A13Rik"
                     /note="major polyA site"
     polyA_site      1649
                     /gene="Magea9"
                     /gene_synonym="3830417A13Rik"
                     /note="major polyA site"
ORIGIN      
        1 gccattttgt gaagctctcg gaagagtgac gttccttcag cacgccgtgt atctccggac
       61 acacaattca gagctggcac accgggcttt ttgaatccag ggacttgggg tgctcacgcc
      121 cttttgtaag ggtcctcaga aagggaaagt gagcctgtac agcctgcggt atcatcaaat
      181 agcaggcaga gctaccagag ggaattgtct aatctcttcc aacaatccag gcattagtct
      241 aaaggagctg aagaacttga caaaagtcat cagaggaagg atctagtgca ttggtaggaa
      301 ggaaactcaa gatggaacct actgagaaca accagaactt caacctatgg gacatccctc
      361 gggcccaaac tgaagaaagg ggccccggga gtacccagga ccctatagct gaggcagagg
      421 aggtggaagc cattgccacc gccccagggg atgtgcctgc tggagggaca cctagttctc
      481 cccagagtgc tcagggagac ccctctcctc ccactgccat gggttctatt tcaggggcat
      541 catttgaaaa tcctctatct gaggtgtctg gtgctgagtc cccctcccag gatggactaa
      601 atgaaaagat aattgatttg gtgagattcc tgcttgttaa gtttcgaagg atggaactaa
      661 caaataagga agaaatgatt gttaagacca tgggagatta tgaggagcac tattctgtga
      721 tctttagtaa ggctgccgaa tgcatgaagc tgatttttgg tgttgacatg ttggaagtgg
      781 atccttttgt ccactcctat tttctacacc ctgctctggg aatcacctat gacgggatgc
      841 tacatggagt tataggtgta cccaagacag gtctggttat acttgtccta tgtgtcatct
      901 ttatagagaa caattgtgtc agagaggagg tattctggca tgcaatgaat atcctaggga
      961 tgcaggctgg aatcgatcat ttcatatttg gggagcccag gagtctcatc actgaagatt
     1021 ttgtagagga agggtatgtg gaatacaggc aggtgcccaa cagcaatcct ccttgctttg
     1081 agttcctgtg gggcgcacga gcttatgctg aaaccaccaa gatgaaaatc ctggagtttt
     1141 atgccagcat tgttaggcag gatcccagat cctaccctga gaagtatgct gaggccttga
     1201 gggaagagca agagagggct taggctagga aagcccaaca aatactactg ctctgaccag
     1261 cacaacctgt agtgcactag caatttatgg tcaggcagaa cagtaaaata agtggtagac
     1321 ccccaaatga gaggtattgg aaagagagtg taacccattc ctttcttact gttctgtttg
     1381 ggtgacttag gatcattatt ttagaacgtt gttaactttt actttaagac tcatttactt
     1441 gagaatttta agattaaaaa aatgacatca ataatacctg tgttgattta tgtcaggaga
     1501 atttgttatc ttaaaaacag acaagaatgt tttctaattt gtaatatgtc acatgatatg
     1561 ataccattaa agttttaaat ttcctggaca acagaaacca cactagaatg aacataaaga
     1621 acagaataaa attaaatttg tgtcgtgta
//
