LOCUS       NM_029906               1219 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus lysozyme 3 (Lyz3), mRNA.
ACCESSION   NM_029906
VERSION     NM_029906.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1219)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1219)
  AUTHORS   Nelson,P.S., Pritchard,C., Abbott,D. and Clegg,N.
  TITLE     The human (PEDB) and mouse (mPEDB) Prostate Expression Databases
  JOURNAL   Nucleic Acids Res 30 (1), 218-220 (2002)
   PUBMED   11752298
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            DV040577.1, AK035427.1 and AC139638.14.
            
            On Apr 11, 2009 this sequence version replaced NM_029906.2.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK020538.1, BC120797.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849381 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-75                DV040577.1         42-116
            76-512              AK035427.1         2-438
            513-1219            AC139638.14        55418-56124
FEATURES             Location/Qualifiers
     source          1..1219
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="10"
                     /map="10 65.28 cM"
     gene            1..1219
                     /gene="Lyz3"
                     /gene_synonym="9530003J23Rik; Lyzf1"
                     /note="lysozyme 3"
                     /db_xref="GeneID:77397"
                     /db_xref="MGI:MGI:1924647"
     exon            1..246
                     /gene="Lyz3"
                     /gene_synonym="9530003J23Rik; Lyzf1"
                     /inference="alignment:Splign:2.1.0"
     CDS             102..557
                     /gene="Lyz3"
                     /gene_synonym="9530003J23Rik; Lyzf1"
                     /EC_number="3.2.1.17"
                     /note="lysozyme f1"
                     /codon_start=1
                     /product="lysozyme C-like precursor"
                     /protein_id="NP_084182.2"
                     /db_xref="CCDS:CCDS24192.1"
                     /db_xref="GeneID:77397"
                     /db_xref="MGI:MGI:1924647"
                     /translation="MKAPLTLLTLGLLLLSITIQGKVYDRCSLARTLQSLGLAGFQGI
                     TLANWVCLAKWESNFNTNTTRFNPEDQSTSYGIFQINSRFWCNDGKTPGSRNFCRISC
                     KALLKSNIWSAVVCAKRIVKDPQGIYSWAGWIKHCKNKNLKEYIRGCHL"
     exon            247..411
                     /gene="Lyz3"
                     /gene_synonym="9530003J23Rik; Lyzf1"
                     /inference="alignment:Splign:2.1.0"
     exon            412..490
                     /gene="Lyz3"
                     /gene_synonym="9530003J23Rik; Lyzf1"
                     /inference="alignment:Splign:2.1.0"
     exon            491..1219
                     /gene="Lyz3"
                     /gene_synonym="9530003J23Rik; Lyzf1"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1193..1198
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Lyz3"
                     /gene_synonym="9530003J23Rik; Lyzf1"
                     /note="hexamer: AATAAA"
     polyA_site      1219
                     /gene="Lyz3"
                     /gene_synonym="9530003J23Rik; Lyzf1"
                     /note="major polyA site"
ORIGIN      
        1 cgtcgagtcc ccaaaccgat agaggatgaa gggagttgag agatgcttaa atactggggc
       61 ctgatcgctc tgggcagttg ctgaggaggt ttccaggcaa catgaaggct cccctaactc
      121 tccttactct agggctcctc ctgctctcca tcaccatcca gggcaaggtc tacgaccgat
      181 gttctttggc cagaactcta caaagtcttg gtctagctgg tttccaagga atcacgctgg
      241 caaactgggt ctgtttggcc aaatgggaga gtaattttaa cacaaacact acaagattca
      301 accctgaaga ccaaagcacc agctatggga tctttcagat caacagcaga ttctggtgta
      361 atgacggcaa aaccccagga tcaaggaact tttgtcggat atcctgcaaa gctttgctga
      421 agagcaacat ctggtctgcc gtagtttgtg caaagaggat cgtgaaggat ccacaaggaa
      481 tttattcatg ggcgggatgg ataaaacact gtaaaaacaa aaacctcaaa gagtacattc
      541 ggggctgcca tctgtaactg tctccatgtt cagatcattc gactcttctt ctgagcacag
      601 taaacagtta agtaaaaagt cacctgctgt cgtccccctt cagacaaagt ggacttgcac
      661 aggggcaaga gctggaacaa ataagagtct ttatcctgct ttctctgtgc agcccaggct
      721 ggccttgaac tcagagatct gcctgctctt aaaggtgtat cccaccacta gcactcctag
      781 ctgactagtg tgattatcat ttgatgttaa gcctgtgttt tccgcttgtg aatgaaactg
      841 aagtgggaga gtatttctct aactccttga gttttaaatg cttctctaac attccattct
      901 ccttcaacaa aggcactcag gcttaatcat taataatgaa ctattccccc aaacacacac
      961 acacacacaa aatcatgtta ggcaaaaatc acagctccgg tggtatctga ggccttcgtc
     1021 agttcaaatt actctaaaac ctttcaagct gctcactctg tgggatgaga catagactgc
     1081 aaaagtgact tctaaatggc ggaaaccagg agactcacaa taggcactgt tttcctgtcc
     1141 tgagctttgg cttcagcgtt tgcctgaagt gcttcatttg tattgcttca caaataaatg
     1201 caccttgctt gtgacagtc
//
