LOCUS       NM_001357962             634 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus LysM, putative peptidoglycan-binding, domain
            containing 4 (Lysmd4), transcript variant C, mRNA.
ACCESSION   NM_001357962
VERSION     NM_001357962.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 634)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC158751.7 and CD774408.1.
            
            Transcript Variant: This variant (C) encodes isoform C. Variants C,
            D and E encode the same protein.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7652917.128737.1,
                                           SRR7345562.3535299.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849377
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-86                AC158751.7         76915-77000         c
            87-369              AC158751.7         75653-75935         c
            370-608             AC158751.7         74930-75168         c
            609-634             CD774408.1         1-26                c
FEATURES             Location/Qualifiers
     source          1..634
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 36.71 cM"
     gene            1..634
                     /gene="Lysmd4"
                     /gene_synonym="4930506D23Rik"
                     /note="LysM, putative peptidoglycan-binding, domain
                     containing 4"
                     /db_xref="GeneID:75099"
                     /db_xref="MGI:MGI:1922349"
     exon            1..86
                     /gene="Lysmd4"
                     /gene_synonym="4930506D23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            87..369
                     /gene="Lysmd4"
                     /gene_synonym="4930506D23Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             97..381
                     /gene="Lysmd4"
                     /gene_synonym="4930506D23Rik"
                     /note="isoform C is encoded by transcript variant C; lysM
                     and putative peptidoglycan-binding domain-containing
                     protein 4"
                     /codon_start=1
                     /product="lysM and putative peptidoglycan-binding
                     domain-containing protein 4 isoform C"
                     /protein_id="NP_001344891.1"
                     /db_xref="CCDS:CCDS90251.1"
                     /db_xref="GeneID:75099"
                     /db_xref="MGI:MGI:1922349"
                     /translation="MRQKEVLAKSFQGPAAVCRTPNSHVYMFNNGSGDSGDSSEEESH
                     QVVLRPRGKEHQKNSSQRPGAGTMVLLQRELAQEDSLNKLALQYGCKHSE"
     exon            370..621
                     /gene="Lysmd4"
                     /gene_synonym="4930506D23Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      597..602
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Lysmd4"
                     /gene_synonym="4930506D23Rik"
                     /note="hexamer: AACAAA"
     polyA_site      621
                     /gene="Lysmd4"
                     /gene_synonym="4930506D23Rik"
                     /note="major polyA site"
ORIGIN      
        1 ttggttggct cttagtcccc gcccccggaa gacctgcttt ttgcagccaa tcggcgggcg
       61 cggtggcggt gaagcctggg agcgagttaa gagaaaatga ggcagaagga agtgttagcc
      121 aagagcttcc aaggtccagc tgctgtctgc aggactccaa acagccacgt ttacatgttc
      181 aacaatggca gcggggactc tggggactcc tctgaggaag agtcacatca ggtggtgtta
      241 cgaccccggg gcaaggagca ccagaagaac agcagccaac ggccaggagc aggcaccatg
      301 gttctgctgc agcgggagct ggctcaggaa gacagcctca acaagctggc tctccagtat
      361 ggctgcaaac actcagagtg attaacagtg gcaaagtaag ttggaaagcg tttctggaat
      421 cgctcttttc tcccgcattg aaacagtctg tttcccgctg ttgactccat gctatataca
      481 tgctatatac atgctgtata catgctatat acatgctata tagtacatgc tataatcatg
      541 ctatatactg gcagaagctt tcaccaagct tgcatcagct acacaattaa aaaacaaaca
      601 aacaacttta cctcctaaaa aaaaaaaaaa aaaa
//
