LOCUS       NM_027309               1200 bp    mRNA    linear   ROD 30-JUL-2024
DEFINITION  Mus musculus LysM, putative peptidoglycan-binding, domain
            containing 2 (Lysmd2), mRNA.
ACCESSION   NM_027309
VERSION     NM_027309.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1200)
  AUTHORS   Soulez,M., Saba-El-Leil,M.K., Turgeon,B., Mathien,S., Coulombe,P.,
            Klinger,S., Rousseau,J., Levesque,K. and Meloche,S.
  TITLE     Reevaluation of the Role of Extracellular Signal-Regulated Kinase 3
            in Perinatal Survival and Postnatal Growth Using New Genetically
            Engineered Mouse Models
  JOURNAL   Mol Cell Biol 39 (6), e00527-18 (2019)
   PUBMED   30642949
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1200)
  AUTHORS   Pritsker,M., Doniger,T.T., Kramer,L.C., Westcot,S.E. and
            Lemischka,I.R.
  TITLE     Diversification of stem cell molecular repertoire by alternative
            splicing
  JOURNAL   Proc Natl Acad Sci U S A 102 (40), 14290-14295 (2005)
   PUBMED   16183747
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC123832.4 and DT905233.1.
            
            On Mar 14, 2007 this sequence version replaced NM_027309.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK008800.1, SRR1660819.289001.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-258               AC123832.4         145961-146218
            259-686             DT905233.1         14-441
            687-1200            AC123832.4         157489-158002
FEATURES             Location/Qualifiers
     source          1..1200
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 42.32 cM"
     gene            1..1200
                     /gene="Lysmd2"
                     /gene_synonym="2210402C18Rik"
                     /note="LysM, putative peptidoglycan-binding, domain
                     containing 2"
                     /db_xref="GeneID:70082"
                     /db_xref="MGI:MGI:1917332"
     exon            1..306
                     /gene="Lysmd2"
                     /gene_synonym="2210402C18Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             34..681
                     /gene="Lysmd2"
                     /gene_synonym="2210402C18Rik"
                     /codon_start=1
                     /product="lysM and putative peptidoglycan-binding
                     domain-containing protein 2"
                     /protein_id="NP_081585.2"
                     /db_xref="CCDS:CCDS40693.1"
                     /db_xref="GeneID:70082"
                     /db_xref="MGI:MGI:1917332"
                     /translation="MADLSPAPALREGGPRAHRPSAPSPPPRSRSTSEPEEAELSLSL
                     ARTKTRSYGSTASVRAPLGAGVIERHVEHRVRAGDTLQGIALKYGVTMEQIKRANKLF
                     TNDCIFLKKTLSIPILSEKPLLFNGLNSIDSPESETVDSSFCQEEEPVVSEEELPPPS
                     PQDPDPKPAQPEEVSARDFLQRLDLQIKLSTQAARKLKEESRDEESPYAASLYHS"
     exon            307..638
                     /gene="Lysmd2"
                     /gene_synonym="2210402C18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            639..1200
                     /gene="Lysmd2"
                     /gene_synonym="2210402C18Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1177..1182
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Lysmd2"
                     /gene_synonym="2210402C18Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1200
                     /gene="Lysmd2"
                     /gene_synonym="2210402C18Rik"
                     /note="major polyA site"
ORIGIN      
        1 gagctcggcg cccgggcggc cttggcagga cccatggcgg atctctcgcc tgcgccggcc
       61 ctgcgggaag gcggcccccg tgcgcaccgg ccctcggcgc cctcccctcc gccgcgctct
      121 cgctccacct cggagcccga ggaggccgag ctgtcgctga gcctggcccg caccaagacc
      181 cgctcgtacg gcagcacggc cagcgtgcgg gcgcctctgg gcgccggcgt catcgagcgc
      241 catgtggagc accgggtccg cgccggggac acgcttcagg gcatcgcgct caagtacgga
      301 gtcacgatgg aacagatcaa aagggccaac aaactgttta ccaatgactg tatatttctg
      361 aagaagacgc tgagcatccc aatcctgtcg gagaagcctt tgctgtttaa tggacttaac
      421 tccattgatt ctccggaaag tgaaactgtc gacagcagct tttgtcagga agaggagcct
      481 gtagtgtctg aggaagaact gccccctccc agtcctcagg acccggaccc caagcctgcg
      541 caacccgagg aagtgtctgc cagagatttc ctgcaaagac tggacttaca gattaaactc
      601 tcaacacagg cagccaggaa actcaaagaa gagagcaggg atgaagagag tccctatgct
      661 gcctctcttt atcatagtta gtgactggcc agcggactga tccagatcac agaatggctg
      721 gaccctaaag aacccgccgg ctctggttca ggggcagcgc tgcccctgga ctcccgtagc
      781 gcaccttcga gctgcagtta agtagcccta ctgcagcttg cctgaagtga tcagctcccg
      841 gctttctata gttaagtctt attacggcat gatagcaaaa ctgtatttat tctaacgcct
      901 ttcacttttg tagatggtgg tagttttaga ccggcttttg tagatacaga aagcatcaga
      961 gactctatat atttaagcca aaagctatgt ttatttcctg atgagatcct aaatgtgtgg
     1021 aagacatgat gactgtggag tgataatgca tttgctgtgt gtttataact caagtgctat
     1081 agtatatatt tcaatatcac atattctgta ctaatgtaaa gaaccaaatt ttgtctgcta
     1141 ttttgtaaaa gtaaactaca gatgtctgga tgagaaaata aactatgttt tcacacagga
//
