LOCUS       NM_153121               2401 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus LysM, putative peptidoglycan-binding, domain
            containing 1 (Lysmd1), mRNA.
ACCESSION   NM_153121 NM_028134
VERSION     NM_153121.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2401)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC131769.3 and BC024838.1.
            
            On or before Jul 17, 2010 this sequence version replaced
            NM_028134.2, NM_153121.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK154180.1, BC024838.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-22                AC131769.3         121343-121364
            23-2394             BC024838.1         1-2372
            2395-2401           AC131769.3         126774-126780
FEATURES             Location/Qualifiers
     source          1..2401
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 40.74 cM"
     gene            1..2401
                     /gene="Lysmd1"
                     /gene_synonym="2610022K04Rik"
                     /note="LysM, putative peptidoglycan-binding, domain
                     containing 1"
                     /db_xref="GeneID:217779"
                     /db_xref="MGI:MGI:1919409"
     exon            1..909
                     /gene="Lysmd1"
                     /gene_synonym="2610022K04Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             730..1410
                     /gene="Lysmd1"
                     /gene_synonym="2610022K04Rik"
                     /codon_start=1
                     /product="lysM and putative peptidoglycan-binding
                     domain-containing protein 1"
                     /protein_id="NP_694761.1"
                     /db_xref="CCDS:CCDS17602.1"
                     /db_xref="GeneID:217779"
                     /db_xref="MGI:MGI:1919409"
                     /translation="MASPSRQPPLGGSGLLHGSRARSYGSLVQSSCSPVRERRLEHQL
                     EPGDTLAGLALKYGVTMEQIKRTNRLYTNDSIFLKKTLYIPILSEPRDLFNGLDSEEE
                     NDGEEEVRPSKDEIGSSSGRRKNRGSGSGRPNGTGLPPHQETSTPSHDLSASDFLKKL
                     DSQISLSKKAAAQKLRKGESGVPEEDTGLYPSSPRMQQRAVLGPVPLTRTSRTQTLRD
                     QEDEIFKL"
     exon            910..1271
                     /gene="Lysmd1"
                     /gene_synonym="2610022K04Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1272..2401
                     /gene="Lysmd1"
                     /gene_synonym="2610022K04Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2377..2382
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Lysmd1"
                     /gene_synonym="2610022K04Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      2396
                     /gene="Lysmd1"
                     /gene_synonym="2610022K04Rik"
                     /note="major polyA site"
ORIGIN      
        1 atttcctaca atactttgag acgctgtgcc ttttgggaaa tgaagtcttt tggttattta
       61 ttttattttt ttattttttt gaagagcaca ctgctcacct ggacacagga cctcacatct
      121 cgaaggatcc aggtgttcgg agactcaaga tcctgtatgt ggagccggaa tttcagggtg
      181 ggaccttcct gatgtggagc gaggcgtcag ggatctcagt ggactatata ctacaaactc
      241 ttgctgtcct caggctcgta ctcctcagcc acaacctacc tggggtgggc cttatttgga
      301 acagagagga tgtgggagca cccggcatcc cgactgttgg atgtggggat acactgaggg
      361 aagagtgttg atgagggtgt ctagggttca aaggtcagag atcaggcttg cgaggagttg
      421 gggagggggc gtcgaaagtc aaccgggtca gcgactgaca gctcagggaa gatacttatg
      481 ggtaaggagc tcgtggaaag agaaatgtaa ccggcctggc agacttctta agagacggac
      541 agtaactcca ggcacggcaa gaagcagcaa gaggaggacg acgaatgtag tctctcgaga
      601 gtcgggagac tgtagagaga cgagagaaga gaaaacgaat tatctgaata tccattcctt
      661 gggttcggcc gtcactgtta cttagctggg cttccctcag ttgtgaccct aggtcttgac
      721 agtgaggaga tggcttctcc ctctagacag cctcccctcg gggggtcagg gctgctgcat
      781 gggagccgtg ctcgttctta tggaagcctg gtacaatcat cctgctcccc agtgagggaa
      841 agacgcctgg agcatcaatt ggagcctgga gacaccctgg ctggattagc actcaaatac
      901 ggggtaacga tggaacagat taagcgtaca aaccgccttt atactaacga ctccatcttc
      961 ctgaagaaaa cgctctacat ccccatccta tcagagccca gagacttgtt taatggtttg
     1021 gattctgagg aggaaaatga tggagaggaa gaggtgcgcc cgagtaagga tgagatcgga
     1081 tcatcttcgg ggaggaggaa gaatcgaggg tcagggtcgg gtcggcccaa tggcacaggc
     1141 ctcccgcctc accaggaaac ctccaccccc agccatgacc tttctgcctc tgatttcctt
     1201 aagaagcttg actcacagat cagcctgtca aagaaggctg ctgcccagaa gctgaggaaa
     1261 ggggagagtg gggtacctga ggaggacacg ggtctctacc ctagctcccc tcggatgcag
     1321 cagcgagcag tcctaggccc tgtgccactc acccggacgt ctcggaccca gacactgcgg
     1381 gaccaggaag atgaaatctt caaactctga tgtccccaga actgatgagc aaggcaggat
     1441 gttgaaggac cagcccgagg gggagaggag tctgaggtga ggctgaagaa cagagcttcc
     1501 cagcctgcct cactcctctc cagccatctt tgccaagatt tcttcagctg gggacactta
     1561 gtggcaagcg tagcgagtgg gagcagacct cttcccagtt cttgggctga atctagagtt
     1621 agcctttaga ttcaaaggct cttctatgcc ctcgctgtcc cgttgagcat tccctggcct
     1681 tagagcaggg aagcagagac ccctccccat ctccaatgat cttacctaat ttatttggtg
     1741 ctatattgaa gtaatattta tttgctatat ctaactcctt tctcctctta actgggaaaa
     1801 gaggggggaa tttccatatc actgaagata gggaaaccca gaactgtaag tggaggcggc
     1861 tggctgctcg cctgtcccac tttcctagcg aagcttgttg ctgaggcctg ggagttggtg
     1921 atgctcacca tagaatggca gactgcgctg agttttcccc actcccaagg taaagggtgg
     1981 gactcagttg taactaagaa ctccctacaa cctttcccac gccttggctc tgagagaagg
     2041 cagcgtggtg gatactgact aagcatcctt cttccagctc ctctcctctc cccagcgcgt
     2101 ggtggggcta aggaatggaa gatgctttgg ggttcaagga gaacagttac agaagtgtct
     2161 ttgttacgca ccctagccta cctttgcctt gcccccactt catatgtatc tgtaatctgt
     2221 atctgatctg cagtacaatt tgtcttttgt tccttaagtg atgaaatagg catggcggca
     2281 cagtagtcct gggagtctgt ctccggttca ggagtgggaa taagtgttgt ttctagacct
     2341 ctcctctatg tttagcctga gtatggagct cgagagatta aaccgtgagc cctgtgcatg
     2401 c
//
