LOCUS       NM_001076681            5053 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus LYR motif containing 9 (Lyrm9), mRNA.
ACCESSION   NM_001076681 XM_001001497 XM_358407 XM_905052
VERSION     NM_001076681.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 5053)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 5053)
  AUTHORS   Ingham,N.J., Pearson,S.A., Vancollie,V.E., Rook,V., Lewis,M.A.,
            Chen,J., Buniello,A., Martelletti,E., Preite,L., Lam,C.C.,
            Weiss,F.D., Powis,Z., Suwannarat,P., Lelliott,C.J., Dawson,S.J.,
            White,J.K. and Steel,K.P.
  TITLE     Mouse screen reveals multiple new genes underlying mouse and human
            hearing loss
  JOURNAL   PLoS Biol 17 (4), e3000194 (2019)
   PUBMED   30973865
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK144380.1 and AL592185.35.
            
            [WARNING] On Feb 6, 2025 this sequence was replaced by
            NM_001076681.3.
            
            On Dec 27, 2007 this sequence version replaced NM_001076681.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC130224.1, AK144380.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-851               AK144380.1         2-852
            852-2214            AK144380.1         854-2216
            2215-5053           AL592185.35        49701-52539
FEATURES             Location/Qualifiers
     source          1..5053
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 46.74 cM"
     gene            1..5053
                     /gene="Lyrm9"
                     /gene_synonym="1810012P15Rik"
                     /note="LYR motif containing 9"
                     /db_xref="GeneID:66274"
                     /db_xref="MGI:MGI:1913524"
     exon            1..42
                     /gene="Lyrm9"
                     /gene_synonym="1810012P15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            43..183
                     /gene="Lyrm9"
                     /gene_synonym="1810012P15Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             58..294
                     /gene="Lyrm9"
                     /gene_synonym="1810012P15Rik"
                     /note="UPF0631 protein C17orf108 homolog"
                     /codon_start=1
                     /product="LYR motif-containing protein 9"
                     /protein_id="NP_001070149.1"
                     /db_xref="CCDS:CCDS36240.1"
                     /db_xref="GeneID:66274"
                     /db_xref="MGI:MGI:1913524"
                     /translation="MAPLPGAELVQTPLQLYRYLLRCCRQLPTKGIQEHYKHAVRQSF
                     QVHSDEDNSERIQQIIKRAIEDADWIMNKYRKQN"
     exon            184..276
                     /gene="Lyrm9"
                     /gene_synonym="1810012P15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            277..5053
                     /gene="Lyrm9"
                     /gene_synonym="1810012P15Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      412..417
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Lyrm9"
                     /gene_synonym="1810012P15Rik"
                     /note="hexamer: AAGAAA"
     polyA_site      429
                     /gene="Lyrm9"
                     /gene_synonym="1810012P15Rik"
                     /note="major polyA site"
     polyA_site      543
                     /gene="Lyrm9"
                     /gene_synonym="1810012P15Rik"
     regulatory      5027..5032
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Lyrm9"
                     /gene_synonym="1810012P15Rik"
                     /note="hexamer: AATAAA"
     polyA_site      5051
                     /gene="Lyrm9"
                     /gene_synonym="1810012P15Rik"
ORIGIN      
        1 gtcgctcgcg gtgtctccag ttggcgtccg ccgggaaggc ggggctgagg ctcgcacatg
       61 gcccctctgc caggggcaga gctggtccag acgccattgc agctgtaccg ttacttgtta
      121 cgttgttgcc ggcagctgcc aaccaagggc atccaggagc actacaagca tgctgtcagg
      181 cagagtttcc aagttcattc agatgaagac aactccgaga gaatccagca gattattaaa
      241 agagccattg aagatgccga ctggatcatg aacaaatata ggaaacaaaa ctgagtgtct
      301 ggagcttacg gcgagcgctt agctgccctg gagtcacttg gaactgagaa gccttctgct
      361 cttggaacag catcagttct ggaatattct ttgatcttgt tggctgaaag caagaaatcg
      421 taactgacat ttggtgaggt ggttctcgtc attgcagcca tgtctccagc gtcttttatg
      481 tctgcttttc cagacagaaa cgatatgcaa tttggggaga atttggagtt tttttgcttc
      541 ttctctgtgt ttctcatttt tgcctatctg ttcttttact ttgccctgaa ggcagttaat
      601 ttattctgga ggtcccgtca ccgatctccc agccccatga gagatgtccc ctcagatgac
      661 cacctgtata gaaagaaacg aacgggcttg agaaccaggc agctgtggat ctgaatccca
      721 gccggcatac acgccatctg tcaggtgccc gagtgagcct gggggggtga ggcggcagtc
      781 acgtgccagc tcacaccagc tccctgcaca gggaccttgc tgcacaggga ccttgctgca
      841 cagggacctt gcgaggaagc cgctgtgctc ctcgtcctgt tcagtgactc agctgtgagt
      901 gcgtcttgtc tcctctcaga gtccacacgc cctcttatct gtgccatgct gtgtccgtca
      961 gtctgttaag cagcggcttc ctcccaatat gctccaggca gaaaccctga cccttgaagt
     1021 gggaaaacat ctactacact agaccagcaa taaggtgcaa gtaggcaggg tagacaccag
     1081 caggtccagg cttccgtgct ccacagtgtg tcctctctgg agaggagatt gggtccaagg
     1141 ggaagtggcc caggtgggcg aagtagccag aagatgcaga gaggccacac tgggggttga
     1201 atgttcgtgg ggcactcagg tgagctagtg cctgtctgtg cccttgcagt tctgcgggat
     1261 gatgtgacct ctgtctaagc agaaggggcg gacagtcccg aagcacgtgt gtccacttgt
     1321 gaaagctcac agttttcttc ctcctctttt gatttatttc agacaggatc tcagtgtata
     1381 cactggcagg ccttgaactt ttgaactttc agcagtcttt ctgtctctgc ctcccaagca
     1441 cttagataca ggtgtgccac aacacattgc tgctgctgct gctgctgata aatgctcgtc
     1501 aggacagttt gcaggatgca gctcacttct tcctctatgt gggtcccaga gactgaactc
     1561 gggctatcag gcttggtggc aaatgcctct atctgttgag tcatctgttg gctcttatta
     1621 tttcttcttt aaaaaaagaa gatctttatt ttatttgtgt gtaccacgtg tgtgcaggtg
     1681 ccctcagagg cctgaggaca ttgggctccc tggaactgaa gttataggca gtatgagctg
     1741 tctgatgtaa gtgttaggaa ccaaacctga gtcttctgca agcagttagc gctcacactc
     1801 acgcacacac tcacgctcac gctgagccat ctctctagcc ctctattgtt tctccctgac
     1861 tgctgttctc tgaataggat tgttccctcg acacgtgtgt caaacaacgc taaggacttg
     1921 ggtaagtcag acacccactt gcctggaagg atcattcctc agagacaagc agagccacag
     1981 gtttgggctc ccagatgact gccaggcaaa gggcaagagc aaagccgcag tccctccatc
     2041 cccactgctg ctgtccagtc catctgagcc cagggaccaa tccttacctg gtggtgttcg
     2101 tggcagtaga gtagccatgt gtgccaccat gcctggcctt aggcagagtt gttcattaga
     2161 atggggctga ggagaaagga ctaacactga tttgaggagc tggggctgcc actcacaggg
     2221 agtgtgagag gggtgtgggg tcccgttgtt atgagggtgg tttcagagaa cacaatacag
     2281 atcagtggcc aggttatccc tatgacatag gacattgacc tgtatctggt ggggtctccc
     2341 tattgataaa ataagggtgg aagacgggct tatttcattt gttgaaagtg agggagaggg
     2401 ctgaagagca gttaagagca ctgactgctc ttccagaggt cctgagttta attcccagca
     2461 accacatggt ggctcacaac catctataat gggatttggt gccctcttct ggtatctgaa
     2521 gagagcaata gtgtactcac atttataaaa taaataaggc cggagcaagc agggccagaa
     2581 aatatataaa caaaaagaaa aaggaaaaca taaagaaaaa ggctacttta aaaaaaaaag
     2641 aaagaaagaa agtgagggag aaaaactgaa tctccatgaa tgtgtcctta atatttgatc
     2701 cctctccaag atgtcttctc cagtcatgtg tgtgtgtaag tgtccacatg tatgtgtgtg
     2761 agtgtccaca cacacatgtg ccagtacctg tgtatacctg tgtgtgcaca gggagagcag
     2821 gggttgatga tgggttgtcc cctctgttgc tcagtacctg gcattctgag gcagggtctc
     2881 tccccacagg tcactgattg atgagactgc tagcctgcag attctggggg tctaactcat
     2941 gctctctcct gccacacaca cacacacatc acccgggcct caggtgtgtg ccagtgagcc
     3001 cagcttttct gtgggcatta ggggtctgaa tgcagatctt actcattgtg ctgagctgtc
     3061 ttcacaggcc tttccttctt gttcttaagg acctggtggc aggtggaagt ctgacttcag
     3121 agttgctttg cagttgctgg ccctacttga tgggatgggg acaagaacgg tggcacgggc
     3181 tctgtctgca gtgggtagac catggagtgg catcagtttg atatggaaat ggcagtgtgg
     3241 agaagatccc ctccccaagc atgttaagtt agcataggac cgaagtcagt ggaatagcgg
     3301 ccagtgatgg ctcccaagtg ccagaagcca ggcacagatg gaacagtatc cagtgccaac
     3361 ctccataggt gcctcatctc acaggctgag gccattctgc tccttgaata tgattggcta
     3421 caggtcctgg ctattgacct aagtgcaaca ggtagaatcc aggcgtatgc acacccttct
     3481 ttgttctatt aataagaaac cgaattctct ctggttttgt tcgagtatcg gtcaaggaat
     3541 ttagtgagag tggggtgtag gggagccagc tagtgcatct cctgtgtttt tgagggcttt
     3601 agttaaggat tgtaatgtga cctcattgta aacaaagcta ccctatcaac caagagaggt
     3661 aattggctcc tgcaagattt agctcctagg ggctggcaag atggttccaa caggcactgc
     3721 tgtgcaaacc tgacgactgg agtttgatcc cctgattctg tgttaaggag caaagagaac
     3781 accaatgcct ctcacctcca catgagacac gtggcataca cacacctgcg ttcacacatc
     3841 atgcacacac acagtgataa ccataaaaac aacagtaatc taaagcatac attattttgg
     3901 ggctggagcc atagctcagt agctaagagc acctacggct ctggcattag tcagagttag
     3961 aaccacatct ggtagcttac aactgactgt aactccagct ccagagggat ccaatacctc
     4021 tgaccctgca ggcacctcca ctcaggtgca cacacccaca tgcatacaaa tagtttagaa
     4081 aattatcata aaataaagaa attatatagc atgcttatac cagtatgtac caacgctcct
     4141 aattttataa atgactagcc caggtactgt gttccctgca aagtagtctc ctacaatgta
     4201 gaagaaatgt aattaagaat tagaaatgta attaagactt agacaatctt tagttttgga
     4261 ggaactcaac aagagatgct gccctgggag ctggagagat ggctcagagg tcaagcgcac
     4321 tggctgctct tccagaggtc ctgagttaaa ttcccagcaa ccacatggtg gctcacaacc
     4381 aactataatg atatctggtg ccctttggcc tgcaagcata catggaggca gaatgctgta
     4441 tacataataa ataaaatctt taaaaagaga tggtggaggt agccctagga aggacactca
     4501 gcaagagcct ggacagggta tttatttatt tatttattta ttatctgttt gtttattttt
     4561 accgagtgtt tgttttatgc accaaagtgc tcaggccatc cggcttggtg gcaagtgcct
     4621 ttacccactc agtcatctcg ctggcccaag ctttgtaatc tcccatatca tcaacttgcc
     4681 tgacttagaa gccatcccgt tgatgtccct tgaagtgagt tactgccacc tatttagggt
     4741 cttacttgta cccgagggtg cagtaaaatt agatcttaat actttactgg ggaaacttta
     4801 gccatcaaca tttccctttt cgcccagaca gcagtgtgga ctgagtgcta ggagcccact
     4861 ctcggagcct gtgaatttga agatcatcct aattgtgggg ctcagataaa tgaggacaat
     4921 gagctcacct tgggggcaga gctgtaagga gggtgggcat tgcctctgtg gcacagtagc
     4981 agcactaagc gcttactgta tacctggact ttccaatgcc tttcaaaata aagctaccac
     5041 tctctaaacc att
//
