LOCUS       NM_029327               3125 bp    mRNA    linear   ROD 08-JUN-2024
DEFINITION  Mus musculus LYR motif containing 7 (Lyrm7), transcript variant 1,
            mRNA.
ACCESSION   NM_029327 XM_126331
VERSION     NM_029327.5
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3125)
  AUTHORS   Carninci,P., Waki,K., Shiraki,T., Konno,H., Shibata,K., Itoh,M.,
            Aizawa,K., Arakawa,T., Ishii,Y., Sasaki,D., Bono,H., Kondo,S.,
            Sugahara,Y., Saito,R., Osato,N., Fukuda,S., Sato,K., Watahiki,A.,
            Hirozane-Kishikawa,T., Nakamura,M., Shibata,Y., Yasunishi,A.,
            Kikuchi,N., Yoshiki,A., Kusakabe,M., Gustincich,S., Beisel,K.,
            Pavan,W., Aidinis,V., Nakagawara,A., Held,W.A., Iwata,H., Kono,T.,
            Nakauchi,H., Lyons,P., Wells,C., Hume,D.A., Fagiolini,M.,
            Hensch,T.K., Brinkmeier,M., Camper,S., Hirota,J., Mombaerts,P.,
            Muramatsu,M., Okazaki,Y., Kawai,J. and Hayashizaki,Y.
  TITLE     Targeting a complex transcriptome: the construction of the mouse
            full-length cDNA encyclopedia
  JOURNAL   Genome Res 13 (6B), 1273-1289 (2003)
   PUBMED   12819125
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL954817.9.
            
            On Mar 29, 2019 this sequence version replaced NM_029327.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR9219383.141588.1,
                                           SRR7345562.638025.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164138 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-46                AL954817.9         139512-139557       c
            47-119              AL954817.9         132187-132259       c
            120-190             AL954817.9         129305-129375       c
            191-272             AL954817.9         127539-127620       c
            273-3125            AL954817.9         117310-120162       c
FEATURES             Location/Qualifiers
     source          1..3125
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 32.13 cM"
     gene            1..3125
                     /gene="Lyrm7"
                     /gene_synonym="1700024C24Rik; 9330147L21Rik"
                     /note="LYR motif containing 7"
                     /db_xref="GeneID:75530"
                     /db_xref="MGI:MGI:1922780"
     exon            1..46
                     /gene="Lyrm7"
                     /gene_synonym="1700024C24Rik; 9330147L21Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             29..343
                     /gene="Lyrm7"
                     /gene_synonym="1700024C24Rik; 9330147L21Rik"
                     /note="isoform 1 is encoded by transcript variant 1; LYR
                     motif-containing protein 7; complex III assembly factor
                     LYRM7"
                     /codon_start=1
                     /product="complex III assembly factor LYRM7 isoform 1"
                     /protein_id="NP_083603.4"
                     /db_xref="CCDS:CCDS36154.2"
                     /db_xref="GeneID:75530"
                     /db_xref="MGI:MGI:1922780"
                     /translation="MGQPAKVLQLFKTLHRTRQQVFKNDKRALEAARVKINEEFKKHK
                     NETSPEKIKEMMKLGSDVELLLRTAVIQGIHTDHDTLQLVPRKDLLTENVPYCDAPTQ
                     KQ"
     exon            47..119
                     /gene="Lyrm7"
                     /gene_synonym="1700024C24Rik; 9330147L21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            120..190
                     /gene="Lyrm7"
                     /gene_synonym="1700024C24Rik; 9330147L21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            191..272
                     /gene="Lyrm7"
                     /gene_synonym="1700024C24Rik; 9330147L21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            273..3125
                     /gene="Lyrm7"
                     /gene_synonym="1700024C24Rik; 9330147L21Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      648..653
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Lyrm7"
                     /gene_synonym="1700024C24Rik; 9330147L21Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      673
                     /gene="Lyrm7"
                     /gene_synonym="1700024C24Rik; 9330147L21Rik"
                     /note="major polyA site"
     regulatory      1631..1636
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Lyrm7"
                     /gene_synonym="1700024C24Rik; 9330147L21Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1660
                     /gene="Lyrm7"
                     /gene_synonym="1700024C24Rik; 9330147L21Rik"
     regulatory      2853..2858
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Lyrm7"
                     /gene_synonym="1700024C24Rik; 9330147L21Rik"
                     /note="hexamer: GATAAA"
     polyA_site      2877
                     /gene="Lyrm7"
                     /gene_synonym="1700024C24Rik; 9330147L21Rik"
     regulatory      3096..3101
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Lyrm7"
                     /gene_synonym="1700024C24Rik; 9330147L21Rik"
                     /note="hexamer: AATAAA"
     polyA_site      3115
                     /gene="Lyrm7"
                     /gene_synonym="1700024C24Rik; 9330147L21Rik"
ORIGIN      
        1 agaggcggag tcagcggcgt ggggagccat gggtcagccc gccaaggttt tacagctctt
       61 taaaacactg cacaggacca gacagcaagt ttttaaaaat gataagagag cattggaagc
      121 agccagagta aagataaatg aagaattcaa aaaacataaa aacgagacat ctccagagaa
      181 aataaaagag atgatgaaac taggttctga tgtggaatta ttgctcagaa cagctgttat
      241 tcaaggaatt cacacagacc atgacacact gcaactggtc cccaggaaag atcttctcac
      301 agaaaatgtg ccgtactgtg atgcgccaac ccagaagcag taaagcttcc aggataaacc
      361 catctctgct ccttcccact ttaaatacat acctggcaac ggtcctggac atgcacatgt
      421 ttctctctga agcgcacgtt gcaaatgagc gacaggctga gggctacaga ggagatagac
      481 atgcctttca ctgacatggg caactgaagg cctggggagg caggacgctc ctctctttcc
      541 ctttggtagg tcttttggtc ttccaaagct gtttgccaat gaagcacctt accaaattgg
      601 tgacttttca tctcatggga catacatagc taaatataaa atgctacatt aaattgatgt
      661 ttaatcccca aaatattaag ttggtaaaaa attaacattt ttcttccagc tctcgtctaa
      721 aagcagccat tgtttcccaa agtcccgtgg ttatttttgc ggctaacaaa taattatgta
      781 gtgtatttct ctgcattctt acaaagacaa cgttcccctt tttgttttgt atgtatgggt
      841 gttttgcctg cttaaatgtc tatgcaccag gtgtgtatgc agtgccgtgc ctgcagaggt
      901 caggagaggg aattggatcc cctgggactg gagttataga tggtcatgag tttcctagaa
      961 gaacagccag tgctccaaag cactgagcca tctctctagc cccatgtaaa gacattagat
     1021 agatgaaata tcaaagtcac tctgggtcac tgtagtggcc ctctgtcaga tggcttgtgg
     1081 tctttgtaga ctgctgtgaa atgctataga tctctctctc tctctctccc tttctccctc
     1141 cctcccccct ccccacctct cttttgagat agggtctccc tgtgcagtcc tagccttgaa
     1201 ctctaagatc cacttgcctc tgcctcccca gtgctttaca taatttgatc tctagtgttc
     1261 caaataaata atagtaataa taacaattgg attttatcaa agttaaaaac atttacataa
     1321 cgattagtga acaattatag atgaaatatc tgtcatatat atgatgattc tataaaacat
     1381 atgttaccag gtatgaaaaa agagttatca gactatataa aggacttcaa atattcgaaa
     1441 gcaagcaggg gctgagatgg ctcagaggtt aagaactcct gctgctagga cctgagttca
     1501 gttcccagca ccctttcagg taactcgaag ctgtcactcc atttccaggg gatcctgtgc
     1561 actctactgg cctctaaggg cactgcattt acatgtatag actcaaacca acagtgacac
     1621 acagatgcat aataaaggaa tcgtaaaaca agcaactcaa ctacagagaa gtgatttcct
     1681 gtttattggt gccttgctgc tttgtgtgtc agcttactac ttgcatgcct ggtgcccaca
     1741 gagaccccat aaaggttgtc ggatacctta gaactcctct cttacaaagg gttgtgagcc
     1801 gccgtatggg tgctggaaat tgaacctcgg tcatctggaa cagtgtttct taaccactca
     1861 gccatctctc cagtccctca acccaacttt aaaagtaata tttgaacaga tgcttcatca
     1921 aaaaagatac atggaagctg tcagggttgc cagttttgga acccacagga tggaacgaga
     1981 gaaccaaatt ctgcaagttc gtgcttcatg cacacacaat cacagttttg aattttttat
     2041 tttttggtct tttgaaacag ggtttctttg tgtagctttt tctgtcctga acctcactct
     2101 gcagaccagg gtgacctcaa acttacagag atctctgcct gcctctgcct cccaagtgct
     2161 gggattaaag gcatgcgcca ccacgaccta gcttaagttt tctcttttag atcttatatt
     2221 tatttgtatg agtgttttgc cttcatgcgt ttttgtgtgc cacttgcatc tctgttgtat
     2281 tacagatggt tgtcagccaa catgtgggtg ccagaaatgt cactaagggt cttggcaaaa
     2341 gcactaagtg ctctcaactg ctgagccatc tctccagcca catttttttt tttttttttt
     2401 ttttgagaca gggtttgtct gtgcagccct ggctgtcctg gaactcactt tgtacaccag
     2461 gctggtctcg aactcagaaa tccgcctgcc tctgtctcct gagtgctggg attaaaggcg
     2521 tgcaccacca tacctggcta caaattttta aagatatgca aatgacagat atagtgtgag
     2581 aagttgctag tacattaaca ggcactagga attaaaatca tagtgacata gttatgtgtc
     2641 tattagaatg gccgaaatct ggatggttga caatatcaag tattggcaag gatatgactt
     2701 ttctgagaca gggtctcact gtgtagcctt ggctagtctg gaacacatta tatatttttt
     2761 tccttatttt atcaaatccc taaattatcc atcatcctat tggctcagga cagattcaag
     2821 ttttattgtg atggttgttt ttgcactgct gtgataaaac aggtgaagaa taacttacgg
     2881 gtttgtgtta cagcatgatt tcattccaat accttaaggc gacaccttaa caaaacatgg
     2941 tggcagacag gaaacacttg gctaactaag cctggcaggg agtgggtggg caggcataat
     3001 gttaaaatga ctgtttctag tgacctactt gtgccaatca ggttccacct cctaaaggtt
     3061 ccacatgctt caaaatagcc ctatgagctg ggggaaataa aaacaaaaaa caaaactgtg
     3121 ggaga
//
