LOCUS       NM_207527                598 bp    mRNA    linear   ROD 06-AUG-2023
DEFINITION  Mus musculus LY6/PLAUR domain containing 9 (Lypd9), mRNA.
ACCESSION   NM_207527 XM_147551
VERSION     NM_207527.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 598)
  AUTHORS   Feng J, Liang P, Chen Y, Zhang X, Songyang Z, Zheng H, Cao S and
            Huang J.
  TITLE     Testis-specific Lypd9 is dispensable for spermatogenesis in mouse
  JOURNAL   Mol Reprod Dev 85 (2), 87-89 (2018)
   PUBMED   29247571
  REMARK    GeneRIF: Testis specific Lypd9 is dispensable for spermatogenesis
            in mouse.
REFERENCE   2  (bases 1 to 598)
  AUTHORS   Loughner CL, Bruford EA, McAndrews MS, Delp EE, Swamynathan S and
            Swamynathan SK.
  TITLE     Organization, evolution and functions of the human and mouse
            Ly6/uPAR family genes
  JOURNAL   Hum Genomics 10, 10 (2016)
   PUBMED   27098205
  REMARK    Review article
            Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL663107.13.
            
            On Apr 15, 2010 this sequence version replaced NM_207527.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments. This locus has support in
            orthologs.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CN842576.1, BC048595.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-71                AL663107.13        95937-96007         c
            72-162              AL663107.13        95441-95531         c
            163-339             AL663107.13        90362-90538         c
            340-598             AL663107.13        89184-89442         c
FEATURES             Location/Qualifiers
     source          1..598
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 36.19 cM"
     gene            1..598
                     /gene="Lypd9"
                     /gene_synonym="4930504O13Rik; Gm524"
                     /note="LY6/PLAUR domain containing 9"
                     /db_xref="GeneID:403200"
                     /db_xref="MGI:MGI:2685370"
     exon            1..71
                     /gene="Lypd9"
                     /gene_synonym="4930504O13Rik; Gm524"
                     /inference="alignment:Splign:2.1.0"
     exon            72..162
                     /gene="Lypd9"
                     /gene_synonym="4930504O13Rik; Gm524"
                     /inference="alignment:Splign:2.1.0"
     CDS             96..533
                     /gene="Lypd9"
                     /gene_synonym="4930504O13Rik; Gm524"
                     /codon_start=1
                     /product="uncharacterized protein LOC403200 precursor"
                     /protein_id="NP_997410.1"
                     /db_xref="CCDS:CCDS24731.1"
                     /db_xref="GeneID:403200"
                     /db_xref="MGI:MGI:2685370"
                     /translation="MHPATPSRLLLVCSLAFMPFSTDPWEITMNEIEEKEVDEFNSSG
                     LKCPTCFTVKGRECSPELKWCSTDKIKCVELSGIINTGVNNVPIQLMKCITIEQCKDT
                     ATAYMGFTISNKSEICKSAIRNGARVRPPTPIFFVLFLKKLLH"
     exon            163..339
                     /gene="Lypd9"
                     /gene_synonym="4930504O13Rik; Gm524"
                     /inference="alignment:Splign:2.1.0"
     exon            340..598
                     /gene="Lypd9"
                     /gene_synonym="4930504O13Rik; Gm524"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 accacacgca tgcgcgcgca atgcagtttg gcctacttta ggaagaaccc cgcctcgaat
       61 cccagcacca gagacgggac ctaacagtct ggaccatgca ccctgccacc ccgagcaggc
      121 ttctcttggt ctgtagcctc gcctttatgc ccttctctac agacccctgg gaaattacga
      181 tgaacgagat agaggagaag gaagtggatg aattcaactc cagcggtctc aagtgtccca
      241 catgcttcac cgtgaagggg agagagtgca gtccagagct caagtggtgt tccacggaca
      301 agataaagtg tgtggagctc tccggcatca taaacacagg tgtcaacaac gtccccattc
      361 agctgatgaa atgcataacc atagaacagt gcaaagacac agcgacggct tatatgggtt
      421 ttacaatcag taacaaaagt gaaatctgta agtcagccat cagaaacggg gccagagtca
      481 gacccccaac ccccatcttc tttgttctct tcctgaagaa actgcttcac tgagcagctg
      541 cagaggctca gccaccatca ccgaagcatt aaaggtgcag gttttgtttg tttatctc
//
