LOCUS       NM_029806               1377 bp    mRNA    linear   ROD 04-APR-2024
DEFINITION  Mus musculus Ly6/Plaur domain containing 5 (Lypd5), mRNA.
ACCESSION   NM_029806 XM_133245 XM_906344 XM_988816
VERSION     NM_029806.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1377)
  AUTHORS   Loughner,C.L., Bruford,E.A., McAndrews,M.S., Delp,E.E.,
            Swamynathan,S. and Swamynathan,S.K.
  TITLE     Organization, evolution and functions of the human and mouse
            Ly6/uPAR family genes
  JOURNAL   Hum Genomics 10, 10 (2016)
   PUBMED   27098205
  REMARK    Review article
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1377)
  AUTHORS   Tang,T., Li,L., Tang,J., Li,Y., Lin,W.Y., Martin,F., Grant,D.,
            Solloway,M., Parker,L., Ye,W., Forrest,W., Ghilardi,N., Oravecz,T.,
            Platt,K.A., Rice,D.S., Hansen,G.M., Abuin,A., Eberhart,D.E.,
            Godowski,P., Holt,K.H., Peterson,A., Zambrowicz,B.P. and de
            Sauvage,F.J.
  TITLE     A mouse knockout library for secreted and transmembrane proteins
  JOURNAL   Nat Biotechnol 28 (7), 749-755 (2010)
   PUBMED   20562862
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC159140.10 and BC107187.2.
            
            On Mar 1, 2018 this sequence version replaced NM_029806.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK008654.1, BC107187.2 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849376
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-28                AC159140.10        91019-91046         c
            29-963              BC107187.2         1-935
            964-1377            AC159140.10        85995-86408         c
FEATURES             Location/Qualifiers
     source          1..1377
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 10.27 cM"
     gene            1..1377
                     /gene="Lypd5"
                     /gene_synonym="2210003I03Rik; 2310011E23Rik"
                     /note="Ly6/Plaur domain containing 5"
                     /db_xref="GeneID:76942"
                     /db_xref="MGI:MGI:1924192"
     exon            1..107
                     /gene="Lypd5"
                     /gene_synonym="2210003I03Rik; 2310011E23Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             50..820
                     /gene="Lypd5"
                     /gene_synonym="2210003I03Rik; 2310011E23Rik"
                     /note="ly6/PLAUR domain-containing protein 5"
                     /codon_start=1
                     /product="ly6/PLAUR domain-containing protein 5 precursor"
                     /protein_id="NP_084082.1"
                     /db_xref="CCDS:CCDS39830.1"
                     /db_xref="GeneID:76942"
                     /db_xref="MGI:MGI:1924192"
                     /translation="MGIPRTFLHCFLGSLLCLTGSQALQCYSYEHTYFGPFDLSAVKL
                     PSVSCPEGCSEVVLSLDTGYRSLVTMVRKGCWTGPTTGPMQTNQDALPPDYAVVRGCA
                     TDYCNSNLKTHDALPNLSQAPNPQTLSGTECYACLGTHPEDCSPEKSRRVQCHQDQSA
                     CFQGNGRMNIGNFSVPVYIRTCHRPSCTTMGTTSPWTSIDLQGYCCEGHLCNRASVTQ
                     ILPGTMSSAPPRAPRILTLLTAAPLLAIALGASVGFPA"
     exon            108..236
                     /gene="Lypd5"
                     /gene_synonym="2210003I03Rik; 2310011E23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            237..413
                     /gene="Lypd5"
                     /gene_synonym="2210003I03Rik; 2310011E23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            414..560
                     /gene="Lypd5"
                     /gene_synonym="2210003I03Rik; 2310011E23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            561..1377
                     /gene="Lypd5"
                     /gene_synonym="2210003I03Rik; 2310011E23Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gagtggaagg agctgtcctc agagtcagat ctcagctcca caggccgcca tggggatccc
       61 caggaccttc ctgcactgct tcctcgggag cctgctctgc ctgacaggct cccaggccct
      121 acagtgctac agctacgagc acacctactt cgggcccttc gacctcagcg ctgtgaaact
      181 ccccagtgtc tcttgtcctg aggggtgctc tgaggtggtc ttgtcgctgg ataccggtta
      241 ccgcagcctg gtgacaatgg tccggaaagg atgctggaca ggccccacca ccggccccat
      301 gcagaccaac caggatgctc tgcctcccga ctacgcggtg gtccgtggtt gcgccactga
      361 ctactgcaac agcaacctca agactcacga cgccctcccc aacctgagcc aagctcctaa
      421 cccacagacg ctcagtggca ccgagtgcta tgcctgcttg gggacccacc ctgaagactg
      481 ttcccctgag aagtcccgac gggtccagtg ccaccaggac cagagcgcct gttttcaggg
      541 caacggccgg atgaacattg gcaacttctc ggtgcccgtg tacatccgga cctgtcaccg
      601 gccctcctgc accaccatgg gcaccaccag cccctggaca tccatcgacc tgcagggtta
      661 ctgctgcgag ggccacctct gcaacagggc ctcggtgaca cagatcctgc ctggcaccat
      721 gtcctcggcc cctcccagag ctccccgaat cctgaccctg ctgacggctg ctccactact
      781 ggccatcgct ctaggggcgt ccgtcgggtt ccctgcatag acagcacctc caggatcgct
      841 ccgcaactca tcactccagc ccctggtgtg ggctccttta aaaatgatgt gaaaataaga
      901 gctgcactcc tgtccctcca gtcacaacct tccaccctgc tctctgtccc tccttactgc
      961 cgctggcccc acctcctgga aggcccatct atccagtgca ttgaacgagg tccaaccagc
     1021 tttcaatagt gccatcccct ggtcaccaag ccttcaatac atgagccttt tgtgaccctc
     1081 tcacaacaaa ccatgccact caccttaaaa acccacttct agcaaggcta gtggtaatac
     1141 caggctgttg tcccagcact caggaggctg aggcaggagg atagctactt caaggccaag
     1201 ctggactaca ttgctagttt aggtccagcc tgaattacag tgtgagaccc tttcaggcat
     1261 ggtggcacac acctttaatc tcagcaccac ggaggcagag gcaggtctga gtttaaagtc
     1321 aacttcgtct acggagtgaa ttccaggaaa gccaagacta catagtgaga ccatgtt
//
