LOCUS       NM_026671                516 bp    mRNA    linear   ROD 28-MAY-2024
DEFINITION  Mus musculus Ly6/Plaur domain containing 2 (Lypd2), mRNA.
ACCESSION   NM_026671 XM_128291 XM_909599 XM_991420
VERSION     NM_026671.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 516)
  AUTHORS   Mandula,J.K., Sierra-Mondragon,R.A., Jimenez,R.V., Chang,D.,
            Mohamed,E., Chang,S., Vazquez-Martinez,J.A., Cao,Y., Anadon,C.M.,
            Lee,S.B., Das,S., Rocha-Munguba,L., Pham,V.M., Li,R., Tarhini,A.A.,
            Furqan,M., Dalton,W., Churchman,M., Moran-Segura,C.M., Nguyen,J.,
            Perez,B., Kojetin,D.J., Obermayer,A., Yu,X., Chen,A., Shaw,T.I.,
            Conejo-Garcia,J.R. and Rodriguez,P.C.
  TITLE     Jagged2 targeting in lung cancer activates anti-tumor immunity via
            Notch-induced functional reprogramming of tumor-associated
            macrophages
  JOURNAL   Immunity 57 (5), 1124-1140 (2024)
   PUBMED   38636522
REFERENCE   2  (bases 1 to 516)
  AUTHORS   Loughner,C.L., Bruford,E.A., McAndrews,M.S., Delp,E.E.,
            Swamynathan,S. and Swamynathan,S.K.
  TITLE     Organization, evolution and functions of the human and mouse
            Ly6/uPAR family genes
  JOURNAL   Hum Genomics 10, 10 (2016)
   PUBMED   27098205
  REMARK    Review article
            Publication Status: Online-Only
REFERENCE   3  (bases 1 to 516)
  AUTHORS   Tang,T., Li,L., Tang,J., Li,Y., Lin,W.Y., Martin,F., Grant,D.,
            Solloway,M., Parker,L., Ye,W., Forrest,W., Ghilardi,N., Oravecz,T.,
            Platt,K.A., Rice,D.S., Hansen,G.M., Abuin,A., Eberhart,D.E.,
            Godowski,P., Holt,K.H., Peterson,A., Zambrowicz,B.P. and de
            Sauvage,F.J.
  TITLE     A mouse knockout library for secreted and transmembrane proteins
  JOURNAL   Nat Biotechnol 28 (7), 749-755 (2010)
   PUBMED   20562862
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC099511.1.
            
            On or before Jul 24, 2006 this sequence version replaced
            XM_128291.6, XM_909599.2, XM_991420.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC099511.1, CK794492.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849376
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..516
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 34.26 cM"
     gene            1..516
                     /gene="Lypd2"
                     /gene_synonym="0610005K03Rik; Lypdc2; VLL"
                     /note="Ly6/Plaur domain containing 2"
                     /db_xref="GeneID:68311"
                     /db_xref="MGI:MGI:1915561"
     exon            1..84
                     /gene="Lypd2"
                     /gene_synonym="0610005K03Rik; Lypdc2; VLL"
                     /inference="alignment:Splign:2.1.0"
     CDS             27..410
                     /gene="Lypd2"
                     /gene_synonym="0610005K03Rik; Lypdc2; VLL"
                     /note="ly6/PLAUR domain-containing protein 2; H8C4
                     protein"
                     /codon_start=1
                     /product="ly6/PLAUR domain-containing protein 2 precursor"
                     /protein_id="NP_080947.1"
                     /db_xref="CCDS:CCDS27529.1"
                     /db_xref="GeneID:68311"
                     /db_xref="MGI:MGI:1915561"
                     /translation="MQGTWMVLLALILGTFGELAMALQCYTCANPVSASNCVTTTHCH
                     INETMCKTTLYSLEIVFPFLGDSTVTKSCASKCEPSDVDGIGQTRPVSCCNSDLCNVD
                     GAPSLGSPGGLLLALALFLLLGVLL"
     exon            85..204
                     /gene="Lypd2"
                     /gene_synonym="0610005K03Rik; Lypdc2; VLL"
                     /inference="alignment:Splign:2.1.0"
     exon            205..492
                     /gene="Lypd2"
                     /gene_synonym="0610005K03Rik; Lypdc2; VLL"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcaggcctg agtgaggacc tcgaccatgc aggggacctg gatggtgctg ttggcactga
       61 tattgggcac cttcggggag cttgctatgg ccttacagtg ctacacctgt gcgaatcctg
      121 tgagtgcatc caactgtgtc accaccaccc actgccacat caatgaaacc atgtgcaaga
      181 ctacgctcta ctccctggag attgttttcc ctttcctggg ggactccacg gtgaccaagt
      241 cctgcgccag caagtgtgag ccttcggatg tggatggcat tgggcaaacc cggccagtgt
      301 cctgctgcaa ttctgaccta tgcaacgtgg atggggcacc cagcctgggc agtcctggtg
      361 gcctgctcct tgccctggca cttttcttgc tcttgggtgt cctgctgtaa agccatggcc
      421 atctagctcc actcccttgt ccctgacatc ccagttccct aatgcctaga agaaatacaa
      481 tggccatctg caaaaaaaaa aaaaaaaaaa aaaaaa
//
