LOCUS       NM_001381982            1065 bp    mRNA    linear   ROD 06-AUG-2023
DEFINITION  Mus musculus Ly6/PLAUR domain containing 11 (Lypd11), transcript
            variant 3, mRNA.
ACCESSION   NM_001381982 XM_006539710
VERSION     NM_001381982.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1065)
  AUTHORS   Loughner CL, Bruford EA, McAndrews MS, Delp EE, Swamynathan S and
            Swamynathan SK.
  TITLE     Organization, evolution and functions of the human and mouse
            Ly6/uPAR family genes
  JOURNAL   Hum Genomics 10, 10 (2016)
   PUBMED   27098205
  REMARK    Review article
            Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC161488.7.
            
            On Apr 21, 2020 this sequence version replaced XM_006539710.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189685.128.1, SRR5189673.59103.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-39                AC161488.7         97969-98007
            40-144              AC161488.7         98773-98877
            145-285             AC161488.7         100256-100396
            286-471             AC161488.7         101191-101376
            472-603             AC161488.7         101466-101597
            604-1065            AC161488.7         101922-102383
FEATURES             Location/Qualifiers
     source          1..1065
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 12.46 cM"
     gene            1..1065
                     /gene="Lypd11"
                     /gene_synonym="EG210155; Gm4763"
                     /note="Ly6/PLAUR domain containing 11"
                     /db_xref="GeneID:210155"
                     /db_xref="MGI:MGI:3643098"
     exon            1..39
                     /gene="Lypd11"
                     /gene_synonym="EG210155; Gm4763"
                     /inference="alignment:Splign:2.1.0"
     exon            40..144
                     /gene="Lypd11"
                     /gene_synonym="EG210155; Gm4763"
                     /inference="alignment:Splign:2.1.0"
     CDS             81..827
                     /gene="Lypd11"
                     /gene_synonym="EG210155; Gm4763"
                     /note="isoform 3 precursor is encoded by transcript
                     variant 3"
                     /codon_start=1
                     /product="uncharacterized protein LOC210155 isoform 3
                     precursor"
                     /protein_id="NP_001368911.1"
                     /db_xref="GeneID:210155"
                     /db_xref="MGI:MGI:3643098"
                     /translation="MGACRIQYVLLLSLLGFCPCSDTLKCQKGIMVKLGSGFTKSEIK
                     WISPGTTETAPEEICQETLLLIDVGEKSLILASKGSSKAESKSVNDVQVFSGGPGIVT
                     ASYVHFCNTELCNSANSTSVLIKNVKLSESSGQGSIQCPVCLHFRGSCSQHTKFVLCP
                     KDTRCYFSDMTVEGGGLKNFFSLDGCLANSAKNLLKSQTSIGIFSVVEVSNPGSSKSP
                     SRVVASILLTWMLGLRALLSSLYAGICPLC"
     exon            145..285
                     /gene="Lypd11"
                     /gene_synonym="EG210155; Gm4763"
                     /inference="alignment:Splign:2.1.0"
     exon            286..471
                     /gene="Lypd11"
                     /gene_synonym="EG210155; Gm4763"
                     /inference="alignment:Splign:2.1.0"
     exon            472..603
                     /gene="Lypd11"
                     /gene_synonym="EG210155; Gm4763"
                     /inference="alignment:Splign:2.1.0"
     exon            604..1065
                     /gene="Lypd11"
                     /gene_synonym="EG210155; Gm4763"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agagcacaac gggaagtgct ttttaaggct gagattctgt tcccaggtcc tgatcagctc
       61 ttcccagcct cagagaagcc atgggagcct gccgcatcca gtatgtcctg ctcctctctc
      121 tgctgggctt ctgcccctgc tcagatactc tgaagtgtca gaagggaatt atggtgaaat
      181 taggtagtgg cttcactaag tcagaaatta aatggatatc acctgggacc actgaaactg
      241 cacctgagga gatatgtcag gagacactgc tgctcataga tgtaggtgaa aaatctctca
      301 tattggcaag taaaggcagc agcaaggcgg agagtaaaag tgtcaatgat gtccaggtgt
      361 tttccggagg acctggaata gtgactgcct cttatgtcca cttctgtaac actgaactgt
      421 gcaacagtgc taacagcacc agtgtcctca ttaaaaacgt gaaactttca gagtcctctg
      481 gacagggatc cattcaatgt cctgtctgtt tgcactttcg gggttcctgc tcccagcata
      541 ccaaatttgt cctctgccct aaggacactc gttgctattt cagtgacatg actgtagaag
      601 gaggtgggct caagaacttc tttagccttg atgggtgcct ggccaactca gccaaaaacc
      661 tattgaaaag ccaaacttca atcggaatct tctctgtagt ggaagtttct aatccaggct
      721 ccagcaagtc accctcacgt gtagtcgcaa gcattctcct gacctggatg ttagggctca
      781 gggctcttct cagctctttg tatgctggga tctgtcctct ctgctgaacc catttcctga
      841 ccattcttaa tccctcttgg ccacccagac ccagccctcc tctgacttca aagacccgag
      901 gctgggctct gttggcctgt gcttctcctg ggcgccctca tccctcaccc acacacctct
      961 gcccctcatg cttagacttg ggagccactg agcccagccg gctccagagc agacaagcac
     1021 acgttgacca cgtgtggaaa aataaagttg ctgttgtttg tccaa
//
