LOCUS       NM_001347049             842 bp    mRNA    linear   ROD 01-AUG-2024
DEFINITION  Mus musculus lymphocyte antigen 6 family member L (Ly6l), mRNA.
ACCESSION   NM_001347049 XM_006521616
VERSION     NM_001347049.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 842)
  AUTHORS   Loughner,C.L., Bruford,E.A., McAndrews,M.S., Delp,E.E.,
            Swamynathan,S. and Swamynathan,S.K.
  TITLE     Organization, evolution and functions of the human and mouse
            Ly6/uPAR family genes
  JOURNAL   Hum Genomics 10, 10 (2016)
   PUBMED   27098205
  REMARK    Review article
            Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC121359.8.
            
            On Nov 15, 2016 this sequence version replaced XM_006521616.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments and orthologous data.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN00849381
                              [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on single protein-coding
                                         transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-87                AC121359.8         127448-127534       c
            88-204              AC121359.8         127235-127351       c
            205-842             AC121359.8         125173-125810       c
FEATURES             Location/Qualifiers
     source          1..842
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 34.37 cM"
     gene            1..842
                     /gene="Ly6l"
                     /gene_synonym="Gm20654"
                     /note="lymphocyte antigen 6 family member L"
                     /db_xref="GeneID:102637705"
                     /db_xref="MGI:MGI:5313101"
     exon            1..87
                     /gene="Ly6l"
                     /gene_synonym="Gm20654"
                     /inference="alignment:Splign:2.1.0"
     CDS             6..428
                     /gene="Ly6l"
                     /gene_synonym="Gm20654"
                     /note="lymphocyte antigen 6 complex locus protein L;
                     lymphocyte antigen 6L; lymphocyte antigen 6 complex, locus
                     L"
                     /codon_start=1
                     /product="lymphocyte antigen 6L precursor"
                     /protein_id="NP_001333978.1"
                     /db_xref="CCDS:CCDS84172.1"
                     /db_xref="GeneID:102637705"
                     /db_xref="MGI:MGI:5313101"
                     /translation="MAPLLLVLWASLVSMELTGGMMVNEVPAQNLSCFECFKVLQASK
                     CHPIECRPNEKVCVSNEVLLYTSTKRRTQISKRCATACPNSNNVIEWSLGNTQARITR
                     RCCSGDRCNRAPGSWEGFWSLPGRLLLPMGLGLFCTLL"
     exon            88..204
                     /gene="Ly6l"
                     /gene_synonym="Gm20654"
                     /inference="alignment:Splign:2.1.0"
     exon            205..842
                     /gene="Ly6l"
                     /gene_synonym="Gm20654"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gagacatggc cccgcttctc ctggtgctct gggcatcgct ggtgtctatg gagctcaccg
       61 gaggcatgat ggtcaacgag gtaccagccc aaaacctgag ctgcttcgag tgcttcaagg
      121 ttctccaggc cagcaagtgt caccccatag agtgtcggcc caacgaaaaa gtctgcgtga
      181 gcaacgaggt tctcctttac acgagtacaa agagaagaac tcagatcagc aagcgctgtg
      241 ccactgcttg tccaaactcc aataatgtca ttgaatggtc attgggcaat actcaggcca
      301 ggatcaccag aagatgctgt tctggggatc gctgcaacag agcacctggg agttgggagg
      361 ggttctggtc cttaccaggg aggctccttc tgccaatggg tctgggcctc ttctgcaccc
      421 tgttgtgagg accacttcct tcttggacct cctgtcttcc acctcaaatc ccaccttcat
      481 ccattccagg acttgcaatt caatggtctg tctgtggggt agaagggagg acaccatatc
      541 ctttgctgag gactcagcag tctgctcctc cctgacatcc tggcccagga actaggaata
      601 aaaccctgct gctcctcatg gagacagaga gggagtattt ccaatgcaga ctataggctt
      661 cttcaaaaaa aaaaaaaaag aaaacccttg acccttggca cactgtcatg cactgtaagt
      721 gggagatgga cctgatgaag caagaggtgc agccacactc tggcactgct ccacttgtgt
      781 cccctgttca tgcacttgaa cttgggcatc tcactcagag acagtaaact tgcttcccca
      841 ca
//
