LOCUS       NM_020498               1156 bp    mRNA    linear   ROD 06-JUN-2024
DEFINITION  Mus musculus lymphocyte antigen 6 family member I (Ly6i),
            transcript variant 1, mRNA.
ACCESSION   NM_020498
VERSION     NM_020498.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1156)
  AUTHORS   Loughner,C.L., Bruford,E.A., McAndrews,M.S., Delp,E.E.,
            Swamynathan,S. and Swamynathan,S.K.
  TITLE     Organization, evolution and functions of the human and mouse
            Ly6/uPAR family genes
  JOURNAL   Hum Genomics 10, 10 (2016)
   PUBMED   27098205
  REMARK    Review article
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1156)
  AUTHORS   Stier,M.T. and Spindler,K.R.
  TITLE     Polymorphisms in Ly6 genes in Msq1 encoding susceptibility to mouse
            adenovirus type 1
  JOURNAL   Mamm Genome 23 (3-4), 250-258 (2012)
   PUBMED   22101863
REFERENCE   3  (bases 1 to 1156)
  AUTHORS   Pflugh,D.L., Maher,S.E. and Bothwell,A.L.
  TITLE     Ly-6I, a new member of the murine Ly-6 superfamily with a distinct
            pattern of expression
  JOURNAL   J Immunol 165 (1), 313-321 (2000)
   PUBMED   10861067
REFERENCE   4  (bases 1 to 1156)
  AUTHORS   Patterson,J.M., Johnson,M.H., Zimonjic,D.B. and Graubert,T.A.
  TITLE     Characterization of Ly-6M, a novel member of the Ly-6 family of
            hematopoietic proteins
  JOURNAL   Blood 95 (10), 3125-3132 (2000)
   PUBMED   10807778
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC124637.10.
            
            On Nov 15, 2017 this sequence version replaced NM_020498.2.
            
            Transcript Variant: This variant (1) represents the longer
            transcript. Both variants 1 and 2 encode the same protein.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC132052.1, AF232024.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849383, SAMN00849388
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-441               AC124637.10        93472-93912         c
            442-558             AC124637.10        92368-92484         c
            559-1156            AC124637.10        90016-90613         c
FEATURES             Location/Qualifiers
     source          1..1156
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15"
     gene            1..1156
                     /gene="Ly6i"
                     /gene_synonym="Ly-6I; Ly-6M"
                     /note="lymphocyte antigen 6 family member I"
                     /db_xref="GeneID:57248"
                     /db_xref="MGI:MGI:1888480"
     exon            1..441
                     /gene="Ly6i"
                     /gene_synonym="Ly-6I; Ly-6M"
                     /inference="alignment:Splign:2.1.0"
     CDS             372..776
                     /gene="Ly6i"
                     /gene_synonym="Ly-6I; Ly-6M"
                     /note="lymphocyte antigen 6I; lymphocyte antigen 6M;
                     lymphocyte antigen 6 complex, locus I"
                     /codon_start=1
                     /product="lymphocyte antigen 6I precursor"
                     /protein_id="NP_065244.2"
                     /db_xref="CCDS:CCDS27539.1"
                     /db_xref="GeneID:57248"
                     /db_xref="MGI:MGI:1888480"
                     /translation="MDTSHAIKSCVLILLVTLLCAERAQGLECYQCYGVPFETSCPSF
                     TCPYPDGFCVAQEEEFIANSQRKKVKSRSCHPFCPDEIEKKFILDPNTKMNISCCQED
                     LCNAAVPTGGSSWTTAGVLLFSLGSVLLQTLM"
     exon            442..558
                     /gene="Ly6i"
                     /gene_synonym="Ly-6I; Ly-6M"
                     /inference="alignment:Splign:2.1.0"
     exon            559..1156
                     /gene="Ly6i"
                     /gene_synonym="Ly-6I; Ly-6M"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1131..1136
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ly6i"
                     /gene_synonym="Ly-6I; Ly-6M"
                     /note="hexamer: AATAAA"
     polyA_site      1153
                     /gene="Ly6i"
                     /gene_synonym="Ly-6I; Ly-6M"
                     /note="major polyA site"
ORIGIN      
        1 caggatgcca gctgagagga gctaagagaa agtaaagtac ttatttcagt ccacttctga
       61 cagacctttc cactgtacct gcagccaggt ctgagaggaa gtaaggactg gtgtgaggag
      121 ggagctgcta ggtgacaaag ggaagaaccc tcaggatagg gctgtggtgg gagtgagatt
      181 aggaaggaag agctgggtgg gtggtggatg agagaagtag gcagacatgt attcctcagg
      241 gaaagctgtg tagagggttg gagggaggga atattggatg gctgagccgt gtgagagccc
      301 aggggtgtga tcaggggtct attaactggc tccaacttcc aaggttttat ctgtgcagcc
      361 cttctccaag gatggacact tctcacgcga taaagtcctg tgtgctgatc cttcttgtga
      421 ccctactgtg tgcagaaaga gctcagggac tggagtgtta ccagtgctat ggagtcccat
      481 ttgagacttc ttgcccatca tttacctgcc cctaccctga tggattctgt gttgctcagg
      541 aggaagaatt tattgcaaac tctcaaagaa agaaagtaaa gagccgttct tgccatcctt
      601 tctgccctga tgaaattgaa aagaagttta tcctggatcc taacaccaag atgaatattt
      661 cctgttgcca ggaagacctc tgcaatgcag cagttcccac tggaggcagc tcctggacca
      721 cggcaggggt gcttctgttc agcctgggct cagtcctcct gcagaccctg atgtgatggt
      781 ccccaccctt gtcctttcat cctaatgtgc aaccactctt tcctggagtc ctctagtgat
      841 gaattatgag ttatagaagc tccaaggtgg gggtagtgtg tggaacaccc ttttttacct
      901 ttgtagcccc tgctgggtag gtaggtgccc tattcctctc tagcgttttc agatctgtac
      961 ttcctggaat gccattttgt tgtggcttgc taatcttggt cctggagtca tgtggccagc
     1021 acagggaaga ggcagcattc caaggtgtta tgccatcacc atccacacat aagtatctgg
     1081 ggtcctgcag ggttcccatg tgttcctctc gatgtccctc tgctgagtcc aataaaccct
     1141 ttgttctccc ggccaa
//
