LOCUS       NM_001405155            1046 bp    mRNA    linear   ROD 14-OCT-2024
DEFINITION  Mus musculus lymphocyte antigen 6 family member G6E (Ly6g6e),
            transcript variant 2, mRNA.
ACCESSION   NM_001405155 XM_030250044
VERSION     NM_001405155.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1046)
  AUTHORS   Loughner,C.L., Bruford,E.A., McAndrews,M.S., Delp,E.E.,
            Swamynathan,S. and Swamynathan,S.K.
  TITLE     Organization, evolution and functions of the human and mouse
            Ly6/uPAR family genes
  JOURNAL   Hum Genomics 10, 10 (2016)
   PUBMED   27098205
  REMARK    Review article
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1046)
  AUTHORS   Wu,M., Puddifoot,C.A., Taylor,P. and Joiner,W.J.
  TITLE     Mechanisms of inhibition and potentiation of alpha4beta2 nicotinic
            acetylcholine receptors by members of the Ly6 protein family
  JOURNAL   J Biol Chem 290 (40), 24509-24518 (2015)
   PUBMED   26276394
  REMARK    GeneRIF: Lynx2 and Ly6g6e have roles in intracellular trafficking
            and allosteric potentiation of alpha4beta2 nAChRs, respectively
REFERENCE   3  (bases 1 to 1046)
  AUTHORS   Coveney,D., Ross,A.J., Slone,J.D. and Capel,B.
  TITLE     A microarray analysis of the XX Wnt4 mutant gonad targeted at the
            identification of genes involved in testis vascular differentiation
  JOURNAL   Gene Expr Patterns 7 (1-2), 82-92 (2007)
   PUBMED   16844427
  REMARK    Erratum:[Gene Expr Patterns. 2008 Sep;8(7-8):528]
REFERENCE   4  (bases 1 to 1046)
  AUTHORS   Mallya,M., Campbell,R.D. and Aguado,B.
  TITLE     Characterization of the five novel Ly-6 superfamily members encoded
            in the MHC, and detection of cells expressing their potential
            ligands
  JOURNAL   Protein Sci 15 (10), 2244-2256 (2006)
   PUBMED   17008713
REFERENCE   5  (bases 1 to 1046)
  AUTHORS   Xie,T., Rowen,L., Aguado,B., Ahearn,M.E., Madan,A., Qin,S.,
            Campbell,R.D. and Hood,L.
  TITLE     Analysis of the gene-dense major histocompatibility complex class
            III region and its comparison to mouse
  JOURNAL   Genome Res 13 (12), 2621-2636 (2003)
   PUBMED   14656967
REFERENCE   6  (bases 1 to 1046)
  AUTHORS   Mallya,M., Campbell,R.D. and Aguado,B.
  TITLE     Transcriptional analysis of a novel cluster of LY-6 family members
            in the human and mouse major histocompatibility complex: five genes
            with many splice forms
  JOURNAL   Genomics 80 (1), 113-123 (2002)
   PUBMED   12079290
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC087117.9.
            
            On Apr 20, 2022 this sequence version replaced XM_030250044.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BI416183.1, SRR15390196.558884.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849376
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-101               AC087117.9         185507-185607
            102-173             AC087117.9         185752-185823
            174-299             AC087117.9         186454-186579
            300-1046            AC087117.9         186676-187422
FEATURES             Location/Qualifiers
     source          1..1046
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 18.59 cM"
     gene            1..1046
                     /gene="Ly6g6e"
                     /gene_synonym="2310011I02Rik; G6e"
                     /note="lymphocyte antigen 6 family member G6E"
                     /db_xref="GeneID:70274"
                     /db_xref="MGI:MGI:1917524"
     exon            1..101
                     /gene="Ly6g6e"
                     /gene_synonym="2310011I02Rik; G6e"
                     /inference="alignment:Splign:2.1.0"
     exon            102..173
                     /gene="Ly6g6e"
                     /gene_synonym="2310011I02Rik; G6e"
                     /inference="alignment:Splign:2.1.0"
     exon            174..299
                     /gene="Ly6g6e"
                     /gene_synonym="2310011I02Rik; G6e"
                     /inference="alignment:Splign:2.1.0"
     exon            300..1046
                     /gene="Ly6g6e"
                     /gene_synonym="2310011I02Rik; G6e"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1014..1019
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ly6g6e"
                     /gene_synonym="2310011I02Rik; G6e"
                     /note="hexamer: AATAAA"
     regulatory      1018..1023
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ly6g6e"
                     /gene_synonym="2310011I02Rik; G6e"
                     /note="hexamer: AATAAA"
     regulatory      1026..1031
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ly6g6e"
                     /gene_synonym="2310011I02Rik; G6e"
                     /note="hexamer: AATAAA"
     polyA_site      1031
                     /gene="Ly6g6e"
                     /gene_synonym="2310011I02Rik; G6e"
     polyA_site      1038
                     /gene="Ly6g6e"
                     /gene_synonym="2310011I02Rik; G6e"
     polyA_site      1046
                     /gene="Ly6g6e"
                     /gene_synonym="2310011I02Rik; G6e"
                     /note="major polyA site"
ORIGIN      
        1 agacacaact ctagagagac agacagctgg gctgagttaa caaacaggga gaaaacagaa
       61 gaccctcaag gcaagcatgg gcaggagtga gagcgcctca gactgctgag ctgtacctgc
      121 catgggcccg tccagcgcct tccttggcgt cctgttcctc tcggggacac tgggtctcac
      181 cacttcccca gccagaggac ggctccgctg ttacacctgc agctttgcca agccctgcga
      241 ccctgttccc agggagtgtc gagaggacga ggtgtgtggt gtcagtgttg gcacctcaga
      301 gcaaaaggag gaggaagtca ttgagcggaa aggctgcctc cccagagccc agtgccctct
      361 gctgggccat gcgacctact ggtcacggtc ctactctctc cggcaccagt gctgtgagca
      421 ggacctatgc aatgctgccg cctcacagcc accccccaac cttcccctca tgactctgct
      481 accccttgca gccatgatcg gctggggagt acatgacttc ctctagccca tgcgtccacg
      541 gctgtcaacc caggattcca gtgtcaccgt ggacatgaaa acacctgcac agatgctgtg
      601 gagacacgct caggagcgtg actttgtata aaaacctcag tcaccgatcc cagtacctct
      661 acagacccgg ttcctacagc cagagttctg ttccctgcat gcaagtggcc gcaacctcac
      721 ctcataagag acccccatat ttaaacctag atgtcccagg tcagctaccc tgcatgagct
      781 gtggggtccc aggcaaaggg acagaagtgt cactggggct ggtgagaaat agagttctgc
      841 tagggggcat gtagcttggt acccgagggt ctcaagaaca gagggctacc ttggggaacc
      901 ataaagagtg tatttaataa aagggctatt gggtagagat atagctcaat gatagagtgc
      961 ttacctacca tacataaggc cctgggttca atcccctaca ccataaataa ataaataaat
     1021 aaataaataa ataagctgta aaagta
//
