LOCUS       NM_001371028            1031 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus lymphocyte antigen 6 family member G6D (Ly6g6d),
            transcript variant 3, mRNA.
ACCESSION   NM_001371028
VERSION     NM_001371028.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1031)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1031)
  AUTHORS   Loughner,C.L., Bruford,E.A., McAndrews,M.S., Delp,E.E.,
            Swamynathan,S. and Swamynathan,S.K.
  TITLE     Organization, evolution and functions of the human and mouse
            Ly6/uPAR family genes
  JOURNAL   Hum Genomics 10, 10 (2016)
   PUBMED   27098205
  REMARK    Review article
            Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1031)
  AUTHORS   Wu,M., Puddifoot,C.A., Taylor,P. and Joiner,W.J.
  TITLE     Mechanisms of inhibition and potentiation of alpha4beta2 nicotinic
            acetylcholine receptors by members of the Ly6 protein family
  JOURNAL   J Biol Chem 290 (40), 24509-24518 (2015)
   PUBMED   26276394
REFERENCE   4  (bases 1 to 1031)
  AUTHORS   Gu,Z., Imai,F., Kim,I.J., Fujita,H., Katayama,Ki., Mori,K.,
            Yoshihara,Y. and Yoshida,Y.
  TITLE     Expression of the immunoglobulin superfamily cell adhesion
            molecules in the developing spinal cord and dorsal root ganglion
  JOURNAL   PLoS One 10 (3), e0121550 (2015)
   PUBMED   25826454
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 1031)
  AUTHORS   Mallya,M., Campbell,R.D. and Aguado,B.
  TITLE     Characterization of the five novel Ly-6 superfamily members encoded
            in the MHC, and detection of cells expressing their potential
            ligands
  JOURNAL   Protein Sci 15 (10), 2244-2256 (2006)
   PUBMED   17008713
REFERENCE   6  (bases 1 to 1031)
  AUTHORS   Mallya,M., Campbell,R.D. and Aguado,B.
  TITLE     Transcriptional analysis of a novel cluster of LY-6 family members
            in the human and mouse major histocompatibility complex: five genes
            with many splice forms
  JOURNAL   Genomics 80 (1), 113-123 (2002)
   PUBMED   12079290
REFERENCE   7  (bases 1 to 1031)
  AUTHORS   Allcock,R.J., Martin,A.M. and Price,P.
  TITLE     The mouse as a model for the effects of MHC genes on human disease
  JOURNAL   Immunol Today 21 (7), 328-332 (2000)
   PUBMED   10871872
  REMARK    Review article
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC087117.9.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: KU253697.1, ERR3363658.5577088.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849376,
                                           SAMN00849377 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-180               AC087117.9         189677-189856       c
            181-247             AC087117.9         189464-189530       c
            248-475             AC087117.9         189096-189323       c
            476-613             AC087117.9         182792-182929       c
            614-1031            AC087117.9         179959-180376       c
FEATURES             Location/Qualifiers
     source          1..1031
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 18.59 cM"
     gene            1..1031
                     /gene="Ly6g6d"
                     /gene_synonym="A930024F17Rik; G6d; G6f; g6f-ly6g6d; MEGT1;
                     NG25; NG32"
                     /note="lymphocyte antigen 6 family member G6D"
                     /db_xref="GeneID:114654"
                     /db_xref="MGI:MGI:2148931"
     exon            1..180
                     /gene="Ly6g6d"
                     /gene_synonym="A930024F17Rik; G6d; G6f; g6f-ly6g6d; MEGT1;
                     NG25; NG32"
                     /inference="alignment:Splign:2.1.0"
     exon            181..247
                     /gene="Ly6g6d"
                     /gene_synonym="A930024F17Rik; G6d; G6f; g6f-ly6g6d; MEGT1;
                     NG25; NG32"
                     /inference="alignment:Splign:2.1.0"
     exon            248..475
                     /gene="Ly6g6d"
                     /gene_synonym="A930024F17Rik; G6d; G6f; g6f-ly6g6d; MEGT1;
                     NG25; NG32"
                     /inference="alignment:Splign:2.1.0"
     CDS             457..828
                     /gene="Ly6g6d"
                     /gene_synonym="A930024F17Rik; G6d; G6f; g6f-ly6g6d; MEGT1;
                     NG25; NG32"
                     /note="isoform 3 is encoded by transcript variant 3;
                     megakaryocyte-enhanced gene transcript 1; lymphocyte
                     antigen 6 complex locus protein G6d; lymphocyte antigen 6
                     complex, locus G6D"
                     /codon_start=1
                     /product="lymphocyte antigen 6 complex locus protein G6d
                     isoform 3"
                     /protein_id="NP_001357957.1"
                     /db_xref="GeneID:114654"
                     /db_xref="MGI:MGI:2148931"
                     /translation="MSPTKKGHRTRCYDCGGGPSNSCKQTVITCGEGERCGFLDRKPQ
                     PSSEQAKQPSATLSHHYPACVATHHCNQVAIESVGDVTFTTQKNCCFGDLCNSAVASS
                     VTPLCILAAAVTTLAWLLPGL"
     exon            476..613
                     /gene="Ly6g6d"
                     /gene_synonym="A930024F17Rik; G6d; G6f; g6f-ly6g6d; MEGT1;
                     NG25; NG32"
                     /inference="alignment:Splign:2.1.0"
     exon            614..1031
                     /gene="Ly6g6d"
                     /gene_synonym="A930024F17Rik; G6d; G6f; g6f-ly6g6d; MEGT1;
                     NG25; NG32"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1003..1008
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ly6g6d"
                     /gene_synonym="A930024F17Rik; G6d; G6f; g6f-ly6g6d; MEGT1;
                     NG25; NG32"
                     /note="hexamer: ATTAAA"
     polyA_site      1031
                     /gene="Ly6g6d"
                     /gene_synonym="A930024F17Rik; G6d; G6f; g6f-ly6g6d; MEGT1;
                     NG25; NG32"
                     /note="major polyA site"
ORIGIN      
        1 attcttctgc tgttacagca gcttccgcgg aaccctcccc tactgtttgt gccactctcc
       61 cgagctggga cgtgccctgg atactggtgc tgttgttcac agcaggccaa ggggtcacca
      121 tcatagccct cagcatagtg ctctggaggc ggcggagggc ccaggggtct cgggacagag
      181 aaccctcagt tcctcatttc aagcctgaag tccaggtcta tgagaacatc cacttggccc
      241 gccttagccc acctaaccac aagaccaggt gatcctggag atatctgcgt ggaaaagcct
      301 gacccacagt cctgtgtctc tagccactgg cacctgaagg attccctgga actttggcca
      361 aggggtggct gagggtgtga ctcgtactgg gcttccaaga gccaccaagc tggaggggcc
      421 agggacaaca taaggaagca gtaacatcgt tctgtgatgt cacctacaaa aaaaggacac
      481 cgcacgcggt gctatgactg cggtggaggc cccagcaact cctgcaagca gacagtgatc
      541 acttgtggtg agggcgagcg ctgcggcttc ctggaccgca aacctcaacc cagctcggag
      601 caagccaagc aaccctccgc gaccttgagc catcactacc cagcctgcgt ggccacgcat
      661 cattgcaatc aagtggccat agagtcagtg ggagacgtga ctttcacaac ccagaaaaac
      721 tgctgttttg gagatctgtg caacagcgcc gtggcaagct ccgtgacccc cttgtgcatc
      781 ttggctgcag ctgttaccac cctggcctgg ctcttgccag gactgtagag ctggagggtg
      841 ggaccgaggg cagggtaagg actgaaggac caagggagtg agggagctgg acatctaagg
      901 taagaagaca aacactccct tgtgtgccgt taaaattgat gaactattct agagaggact
      961 gtaaaaatat ttgtttttca ttctttgagg caaggtgctg ggattaaagg tgtgagccac
     1021 cactaccgaa a
//
