LOCUS       NM_023463                960 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus lymphocyte antigen 6 family member G6C (Ly6g6c), mRNA.
ACCESSION   NM_023463
VERSION     NM_023463.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 960)
  AUTHORS   Loughner,C.L., Bruford,E.A., McAndrews,M.S., Delp,E.E.,
            Swamynathan,S. and Swamynathan,S.K.
  TITLE     Organization, evolution and functions of the human and mouse
            Ly6/uPAR family genes
  JOURNAL   Hum Genomics 10, 10 (2016)
   PUBMED   27098205
  REMARK    Review article
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 960)
  AUTHORS   Archambaud,C., Nahori,M.A., Soubigou,G., Becavin,C., Laval,L.,
            Lechat,P., Smokvina,T., Langella,P., Lecuit,M. and Cossart,P.
  TITLE     Impact of lactobacilli on orally acquired listeriosis
  JOURNAL   Proc Natl Acad Sci U S A 109 (41), 16684-16689 (2012)
   PUBMED   23012479
REFERENCE   3  (bases 1 to 960)
  AUTHORS   Mallya,M., Campbell,R.D. and Aguado,B.
  TITLE     Characterization of the five novel Ly-6 superfamily members encoded
            in the MHC, and detection of cells expressing their potential
            ligands
  JOURNAL   Protein Sci 15 (10), 2244-2256 (2006)
   PUBMED   17008713
REFERENCE   4  (bases 1 to 960)
  AUTHORS   de Buhr,M.F., Mahler,M., Geffers,R., Hansen,W., Westendorf,A.M.,
            Lauber,J., Buer,J., Schlegelberger,B., Hedrich,H.J. and Bleich,A.
  TITLE     Cd14, Gbp1, and Pla2g2a: three major candidate genes for
            experimental IBD identified by combining QTL and microarray
            analyses
  JOURNAL   Physiol Genomics 25 (3), 426-434 (2006)
   PUBMED   16705022
REFERENCE   5  (bases 1 to 960)
  AUTHORS   Uematsu,R., Furukawa,J., Nakagawa,H., Shinohara,Y., Deguchi,K.,
            Monde,K. and Nishimura,S.
  TITLE     High throughput quantitative glycomics and glycoform-focused
            proteomics of murine dermis and epidermis
  JOURNAL   Mol Cell Proteomics 4 (12), 1977-1989 (2005)
   PUBMED   16170054
REFERENCE   6  (bases 1 to 960)
  AUTHORS   Mallya,M., Campbell,R.D. and Aguado,B.
  TITLE     Transcriptional analysis of a novel cluster of LY-6 family members
            in the human and mouse major histocompatibility complex: five genes
            with many splice forms
  JOURNAL   Genomics 80 (1), 113-123 (2002)
   PUBMED   12079290
REFERENCE   7  (bases 1 to 960)
  AUTHORS   Allcock,R.J., Martin,A.M. and Price,P.
  TITLE     The mouse as a model for the effects of MHC genes on human disease
  JOURNAL   Immunol Today 21 (7), 328-332 (2000)
   PUBMED   10871872
  REMARK    Review article
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK003375.1 and AA061950.1.
            
            On Jul 30, 2004 this sequence version replaced NM_023463.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BY774937.1, AK003375.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849376
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-657               AK003375.1         2-658
            658-960             AA061950.1         24-326
FEATURES             Location/Qualifiers
     source          1..960
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 18.59 cM"
     gene            1..960
                     /gene="Ly6g6c"
                     /gene_synonym="1110003M04Rik; G6c; NG24"
                     /note="lymphocyte antigen 6 family member G6C"
                     /db_xref="GeneID:68468"
                     /db_xref="MGI:MGI:2148930"
     exon            1..120
                     /gene="Ly6g6c"
                     /gene_synonym="1110003M04Rik; G6c; NG24"
                     /inference="alignment:Splign:2.1.0"
     CDS             66..446
                     /gene="Ly6g6c"
                     /gene_synonym="1110003M04Rik; G6c; NG24"
                     /note="lymphocyte antigen 6 complex G6C; lymphocyte
                     antigen 6 complex locus protein G6c; lymphocyte antigen 6
                     complex, locus G6C"
                     /codon_start=1
                     /product="lymphocyte antigen 6 complex locus protein G6c
                     precursor"
                     /protein_id="NP_075952.1"
                     /db_xref="CCDS:CCDS28677.1"
                     /db_xref="GeneID:68468"
                     /db_xref="MGI:MGI:2148930"
                     /translation="MKHLLLLTLSALLYCWVSADTRCHSCYKVPVLGCVDRQSCRLEP
                     GHKCLTTNVYLGKMWVFSNLRCGTPEEPCREVFNETNHKLGLNYNTTCCDKDNCNSPA
                     PRPTPALALISLTSLAGLGLWLLH"
     exon            121..231
                     /gene="Ly6g6c"
                     /gene_synonym="1110003M04Rik; G6c; NG24"
                     /inference="alignment:Splign:2.1.0"
     exon            232..960
                     /gene="Ly6g6c"
                     /gene_synonym="1110003M04Rik; G6c; NG24"
                     /inference="alignment:Splign:2.1.0"
     regulatory      941..946
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ly6g6c"
                     /gene_synonym="1110003M04Rik; G6c; NG24"
     polyA_site      959
                     /gene="Ly6g6c"
                     /gene_synonym="1110003M04Rik; G6c; NG24"
                     /experiment="experimental evidence, no additional details
                     recorded"
ORIGIN      
        1 agagctggag acctgggaat ctgctgtcaa ctgctggggc tgtggacatt ctcaggaccc
       61 tcaccatgaa acacctcctg ttgctcaccc tgtctgccct actctactgc tgggtctcag
      121 ctgatactcg atgtcactcc tgctacaaag tccctgtgct gggctgtgtg gatcgccagt
      181 cctgccgcct ggagccgggc cacaaatgcc tgacaacaaa cgtgtacctt gggaagatgt
      241 gggttttctc taacctgcgc tgcggcacac cagaagagcc ttgtcgggag gtcttcaacg
      301 aaaccaacca taagctgggc ctgaactaca acaccacctg ctgtgacaag gataactgta
      361 acagcccggc tccacggccc acacccgcac tggccctcat ctccctcacc tccttggctg
      421 gcctcggcct ctggttattg cattgagact agctccatgg ctacaatctt accacctgct
      481 atagcctgag cctttctccc tgtgtcctca gagctccagc tttccagaat cttctctcct
      541 cccaccccct tcttctgaag atcatgtccc tagtcctata ccatttattt catgggactg
      601 tacctggagt ggcctttcta gccaccgctc ctctccctca cttgtcacct tccactccat
      661 tccacccaca cacagacaca cagacacaca gacacaaaga cacacacaca cacacacaca
      721 cacacacaca cccagtcctt tcccatttcc ttctagaaca ctctacctcc tccactggcc
      781 actgaaaggc tcccctcctt ggacgcacac tgctgtgcct ctgggatcta agtctggaag
      841 aactcctgtc ttgtctccag ggagtgattc caaaaggcgc tggcctcatt gcatgggcct
      901 ggcttaccag accctctgct tgtccccttc tatcttgaga aataaacatc agtgtctaat
//
