LOCUS       NM_008530                877 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus lymphocyte antigen 6 family member F (Ly6f), mRNA.
ACCESSION   NM_008530
VERSION     NM_008530.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 877)
  AUTHORS   Loughner,C.L., Bruford,E.A., McAndrews,M.S., Delp,E.E.,
            Swamynathan,S. and Swamynathan,S.K.
  TITLE     Organization, evolution and functions of the human and mouse
            Ly6/uPAR family genes
  JOURNAL   Hum Genomics 10, 10 (2016)
   PUBMED   27098205
  REMARK    Review article
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 877)
  AUTHORS   Bamezai,A.
  TITLE     Mouse Ly-6 proteins and their extended family: markers of cell
            differentiation and regulators of cell signaling
  JOURNAL   Arch Immunol Ther Exp (Warsz) 52 (4), 255-266 (2004)
   PUBMED   15467490
  REMARK    Review article
REFERENCE   3  (bases 1 to 877)
  AUTHORS   Fleming,T.J., O'hUigin,C. and Malek,T.R.
  TITLE     Characterization of two novel Ly-6 genes. Protein sequence and
            potential structural similarity to alpha-bungarotoxin and other
            neurotoxins
  JOURNAL   J Immunol 150 (12), 5379-5390 (1993)
   PUBMED   8515066
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AC117802.9.
            
            On Apr 11, 2007 this sequence version replaced NM_008530.1.
            
            Sequence Note: This RefSeq record was created using genomic
            sequence because full-length sequence was not available from a
            single strain at the time of review. This transcript is supported
            by sequences from Mus sp. and rat.
            
            ##Evidence-Data-START##
            CDS exon combination :: AA285471.1 [ECO:0000331]
            RNAseq introns       :: single sample supports all introns
                                    SAMN00849381, SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-60                AC117802.9         144088-144147       c
            61-158              AC117802.9         143769-143866       c
            159-275             AC117802.9         142672-142788       c
            276-877             AC117802.9         140334-140935       c
FEATURES             Location/Qualifiers
     source          1..877
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 34.29 cM"
     gene            1..877
                     /gene="Ly6f"
                     /note="lymphocyte antigen 6 family member F"
                     /db_xref="GeneID:17071"
                     /db_xref="MGI:MGI:109441"
     exon            1..60
                     /gene="Ly6f"
                     /inference="alignment:Splign:2.1.0"
     exon            61..158
                     /gene="Ly6f"
                     /inference="alignment:Splign:2.1.0"
     CDS             89..493
                     /gene="Ly6f"
                     /note="lymphocyte antigen 6F; ly-6F; ly-6F.1; lymphocyte
                     antigen 6 complex, locus F"
                     /codon_start=1
                     /product="lymphocyte antigen 6F precursor"
                     /protein_id="NP_032556.1"
                     /db_xref="CCDS:CCDS27543.1"
                     /db_xref="GeneID:17071"
                     /db_xref="MGI:MGI:109441"
                     /translation="MDSCHTTKSCVLILLVVLLCAERAQGLECYNCLGVSLGIACKSI
                     TCPYPDAVCISQQVELIVDSQRRKVKNKLCFPFCPANLENMEILGTTVNVNTSCCKED
                     LCNAPFSTGGSTWTMTRVLLLNLGSVFLQTLL"
     exon            159..275
                     /gene="Ly6f"
                     /inference="alignment:Splign:2.1.0"
     exon            276..877
                     /gene="Ly6f"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 actgtgcctg caacctggtc agagaggaag taaggactgg tgtcaggagg gagctgctag
       61 gtttgatctg tgcagccctt ctccaaggat ggacagttgt cacactacaa agtcctgtgt
      121 actcatcctt cttgtggtcc tattgtgtgc agaaagagct caggggctgg agtgctataa
      181 ctgcctggga gtttcacttg gaattgcctg caaatcaatt acctgcccct accctgatgc
      241 agtctgcatt tctcagcagg tagaacttat tgtggactct caaagaagga aagtaaagaa
      301 caaactctgc tttcctttct gccctgctaa tcttgaaaat atggagatcc tgggtactac
      361 tgtcaacgtg aatacttcct gttgcaagga agacctctgc aatgcaccat tttccactgg
      421 aggcagcacc tggaccatga caagggtgct tctgttaaat ctgggctcgg tcttcctgca
      481 gaccttgctg taaaaggtcc ttccaaggac ctccaccctt gttgttttat cctcatttgc
      541 aactattcct tcctggagcc ctctagtgat gaattatgag atattgaagc tccaaggtgg
      601 gagtagtgtt tgtggaatac gttgtttcaa ctttatagcc cctgcttggt aaatgcccca
      661 ctcctctcta ggaatttcaa atatgtactt cctagaatgc cattttgttg tggcttgcta
      721 atcttggccc tggaggcccg tggctagcag agggtagagg cagaattcca aggtattaag
      781 ccatcaccat ccacacataa gtgtctgagg ttctgcagga ttctcatgta tgcggcttta
      841 tgtccccttg ttgagtccaa taaacccttt gttctcc
//
