LOCUS       NM_010742                694 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus lymphocyte antigen 6 family member D (Ly6d), mRNA.
ACCESSION   NM_010742
VERSION     NM_010742.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 694)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 694)
  AUTHORS   Steiner,I., Flores-Tellez,T.D.N.J., Mevel,R., Ali,A., Wang,P.,
            Schofield,P., Behan,C., Forsythe,N., Ashton,G., Taylor,C.,
            Mills,I.G., Oliveira,P., McDade,S.S., Zaiss,D.M., Choudhury,A.,
            Lacaud,G. and Baena,E.
  TITLE     Autocrine activation of MAPK signaling mediates intrinsic tolerance
            to androgen deprivation in LY6D prostate cancer cells
  JOURNAL   Cell Rep 42 (4), 112377 (2023)
   PUBMED   37060563
  REMARK    GeneRIF: Autocrine activation of MAPK signaling mediates intrinsic
            tolerance to androgen deprivation in LY6D prostate cancer cells.
REFERENCE   3  (bases 1 to 694)
  AUTHORS   Lei,Z., Liu,W., Nie,Y., Yang,Y., Chen,G., Huang,L., Wu,H., Lei,Y.,
            Chen,L., Hu,Q., Rong,H., Yu,S., Song,Q., Tong,F. and Guo,J.
  TITLE     EpCAM Is Essential to Maintaining the Immune Homeostasis of
            Intestines via Keeping the Expression of pIgR in the Intestinal
            Epithelium of Mice
  JOURNAL   Front Immunol 13, 843378 (2022)
   PUBMED   35493520
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 694)
  AUTHORS   Morita,R., Sanzen,N., Sasaki,H., Hayashi,T., Umeda,M.,
            Yoshimura,M., Yamamoto,T., Shibata,T., Abe,T., Kiyonari,H.,
            Furuta,Y., Nikaido,I. and Fujiwara,H.
  TITLE     Tracing the origin of hair follicle stem cells
  JOURNAL   Nature 594 (7864), 547-552 (2021)
   PUBMED   34108685
REFERENCE   5  (bases 1 to 694)
  AUTHORS   Mevel,R., Steiner,I., Mason,S., Galbraith,L.C., Patel,R.,
            Fadlullah,M.Z., Ahmad,I., Leung,H.Y., Oliveira,P., Blyth,K.,
            Baena,E. and Lacaud,G.
  TITLE     RUNX1 marks a luminal castration-resistant lineage established at
            the onset of prostate development
  JOURNAL   Elife 9, e60225 (2020)
   PUBMED   33025905
  REMARK    Publication Status: Online-Only
REFERENCE   6  (bases 1 to 694)
  AUTHORS   Bamezai,A.
  TITLE     Mouse Ly-6 proteins and their extended family: markers of cell
            differentiation and regulators of cell signaling
  JOURNAL   Arch Immunol Ther Exp (Warsz) 52 (4), 255-266 (2004)
   PUBMED   15467490
  REMARK    Review article
REFERENCE   7  (bases 1 to 694)
  AUTHORS   Chin,H., Kwon,O.J., Jung,H.H., Kim,D.S. and Kozak,C.A.
  TITLE     Genetic mapping of the mouse genes encoding the voltage-sensitive
            calcium channel subunits
  JOURNAL   Genomics 28 (3), 592-595 (1995)
   PUBMED   7490102
REFERENCE   8  (bases 1 to 694)
  AUTHORS   Gumley,T.P., McKenzie,I.F., Kozak,C.A. and Sandrin,M.S.
  TITLE     Isolation and characterization of cDNA clones for the mouse
            thymocyte B cell antigen (ThB)
  JOURNAL   J Immunol 149 (8), 2615-2618 (1992)
   PUBMED   1401899
REFERENCE   9  (bases 1 to 694)
  AUTHORS   Matossian-Rogers,A., Rogers,P., Ledbetter,J.A. and Herzenberg,L.A.
  TITLE     Molecular weight determination of two genetically linked cell
            surface murine antigens: ThB and Ly-6
  JOURNAL   Immunogenetics 15 (6), 591-599 (1982)
   PUBMED   7106866
REFERENCE   10 (bases 1 to 694)
  AUTHORS   Eckhardt,L.A. and Herzenberg,L.A.
  TITLE     Monoclonal antibodies to ThB detect close linkage of Ly-6 and a
            gene regulating ThB expression
  JOURNAL   Immunogenetics 11 (3), 275-291 (1980)
   PUBMED   6793507
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from X63782.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: X63782.1, CB587815.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164133 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..694
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 34.27 cM"
     gene            1..694
                     /gene="Ly6d"
                     /gene_synonym="Ly-61; Ly61; Thb"
                     /note="lymphocyte antigen 6 family member D"
                     /db_xref="GeneID:17068"
                     /db_xref="MGI:MGI:96881"
     exon            1..59
                     /gene="Ly6d"
                     /gene_synonym="Ly-61; Ly61; Thb"
                     /inference="alignment:Splign:2.1.0"
     exon            60..158
                     /gene="Ly6d"
                     /gene_synonym="Ly-61; Ly61; Thb"
                     /inference="alignment:Splign:2.1.0"
     exon            159..691
                     /gene="Ly6d"
                     /gene_synonym="Ly-61; Ly61; Thb"
                     /inference="alignment:Splign:2.1.0"
     regulatory      673..678
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ly6d"
                     /gene_synonym="Ly-61; Ly61; Thb"
                     /note="hexamer: AATAAA"
     polyA_site      691
                     /gene="Ly6d"
                     /gene_synonym="Ly-61; Ly61; Thb"
                     /note="major polyA site"
ORIGIN      
        1 gtttaggatg aagacagctc tgctcgtcct ccttgtcttg gctgtggcca ctagcccagc
       61 ctgggcactt cgatgtcacg tgtgcaccaa cagtgccaac tgtaagaacc ctcaggtctg
      121 cccgtccaac ttctacttct gcaaaaccgt cacctcagtg gagcctctga atgggaacct
      181 ggtgaggaaa gagtgtgcaa actcatgcac ctccgactac agccagcagg gccatgtcag
      241 cagtggttcc gaggtcacac aatgctgcca gactgaccta tgcaacgaga ggctggtcag
      301 cgctgcacct ggacatgccc tgctcagcag tgtcaccctg ggcctggcaa cgagcctcag
      361 cctgctcact gttatggctc tctgcctgta atgtactgct tggaatttcc cttgcccctt
      421 cccttctagt cgtcagtgtc cccacggccc atgctttagc catgatggag gcaccaggcg
      481 ctaaggctgg gggataccct tcaaggctgg ggctgggtct tggtgggcac caagagctga
      541 tgacatatat agcacagtgc ctcccccagg acaggaagat gtggcttgtg tcccagcatg
      601 gaagatgggg gacagacatg cttccacccc tctgattttg tacttgttcc agttattttt
      661 tttctacttg gaaataaatg atctaacaat aaaa
//
