LOCUS       NM_001378241             848 bp    mRNA    linear   ROD 07-AUG-2023
DEFINITION  Mus musculus lymphocyte antigen 6 family member A2 (Ly6a2),
            transcript variant 2, mRNA.
ACCESSION   NM_001378241 XM_006521615
VERSION     NM_001378241.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 848)
  AUTHORS   Loughner CL, Bruford EA, McAndrews MS, Delp EE, Swamynathan S and
            Swamynathan SK.
  TITLE     Organization, evolution and functions of the human and mouse
            Ly6/uPAR family genes
  JOURNAL   Hum Genomics 10, 10 (2016)
   PUBMED   27098205
  REMARK    Review article
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 848)
  AUTHORS   Bamezai A.
  TITLE     Mouse Ly-6 proteins and their extended family: markers of cell
            differentiation and regulators of cell signaling
  JOURNAL   Arch Immunol Ther Exp (Warsz) 52 (4), 255-266 (2004)
   PUBMED   15467490
  REMARK    Review article
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC116498.15.
            
            On Feb 4, 2020 this sequence version replaced XM_006521615.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN01164135,
                              SAMN01164143 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-32                AC116498.15        124337-124368
            33-130              AC116498.15        124613-124710
            131-247             AC116498.15        125660-125776
            248-848             AC116498.15        127573-128173
FEATURES             Location/Qualifiers
     source          1..848
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 34.29 cM"
     gene            1..848
                     /gene="Ly6a2"
                     /gene_synonym="I830127L07Rik"
                     /note="lymphocyte antigen 6 family member A2"
                     /db_xref="GeneID:546643"
                     /db_xref="MGI:MGI:3612406"
     exon            1..32
                     /gene="Ly6a2"
                     /gene_synonym="I830127L07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            33..130
                     /gene="Ly6a2"
                     /gene_synonym="I830127L07Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             61..465
                     /gene="Ly6a2"
                     /gene_synonym="I830127L07Rik"
                     /note="lymphocyte antigen 6 complex, locus A2"
                     /codon_start=1
                     /product="lymphocyte antigen 6 complex, locus A2
                     precursor"
                     /protein_id="NP_001365170.1"
                     /db_xref="GeneID:546643"
                     /db_xref="MGI:MGI:3612406"
                     /translation="MDSSHATRSCVLIFFVALLCAERAQGLECYHCPDDPRESSCNTT
                     TCPFPDGFCVTQEAEIIVDSQRRKVKSHQCLSYCPTDLENSPIKDPKVKVKISCCQED
                     LCNAAVPTEGSTWTMAGVLLFSLSSVLLQTLL"
     exon            131..247
                     /gene="Ly6a2"
                     /gene_synonym="I830127L07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            248..848
                     /gene="Ly6a2"
                     /gene_synonym="I830127L07Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 accactgttc ctgaaacctg gtcagagcgg aagttctatc tgtgaagcct gtcctcaagg
       61 atggacagtt ctcacgctac aaggtcctgt gtgctcatct tttttgtggc cctactctgt
      121 gcagaaagag ctcaggggct ggagtgctac cactgcccag atgacccacg agagtcttcc
      181 tgcaatacca caacctgccc cttccctgat ggattctgtg ttactcagga ggcagaaatt
      241 attgtggact ctcaaagaag gaaagtaaag agccatcagt gcctttctta ctgccctact
      301 gatcttgaaa atagcccgat caaggatcct aaggtcaagg tgaagatttc ctgttgccag
      361 gaagacctct gcaatgcagc agttcccact gaaggcagca cctggaccat ggcaggggtg
      421 cttctgttca gcctgagctc agtcctcctg cagaccttgc tgtgatggtc cttccaacaa
      481 ccctcaccct tgtcctttta tcctcatgtg caaccactct ttcctggagt cctctagtga
      541 tgaattatga gttatagaag ctccaaggtg ggagtactgt gtggaacacc ctgttttacc
      601 tttatagccc ctgctgggta ggtgccccac tcctctctaa ggctttcaga tctgtacttc
      661 ctggaatgtt attttgttgt ggcttgcaat tcctggccct ggaggcatgt ggccagcaca
      721 ggcatgagcc agtattccaa ggtgttatgc catcaccatc cacacataag tatctggagt
      781 cctgcagggt tccgatgtgt gctggtcaat gtcccccttt tgagtccaat aaacccttta
      841 ttctccca
//
