LOCUS       NM_025349                487 bp    mRNA    linear   ROD 30-JUL-2024
DEFINITION  Mus musculus LSM7 homolog, U6 small nuclear RNA and mRNA
            degradation associated (Lsm7), transcript variant 4, mRNA.
ACCESSION   NM_025349 XM_359348
VERSION     NM_025349.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 487)
  AUTHORS   Perez-Santangelo,S., Mancini,E., Francey,L.J., Schlaen,R.G.,
            Chernomoretz,A., Hogenesch,J.B. and Yanovsky,M.J.
  TITLE     Role for LSM genes in the regulation of circadian rhythms
  JOURNAL   Proc Natl Acad Sci U S A 111 (42), 15166-15171 (2014)
   PUBMED   25288739
REFERENCE   2  (bases 1 to 487)
  AUTHORS   McKee,A.E., Minet,E., Stern,C., Riahi,S., Stiles,C.D. and
            Silver,P.A.
  TITLE     A genome-wide in situ hybridization map of RNA-binding proteins
            reveals anatomically restricted expression in the developing mouse
            brain
  JOURNAL   BMC Dev Biol 5, 14 (2005)
   PUBMED   16033648
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 487)
  AUTHORS   Suzuki,H., Fukunishi,Y., Kagawa,I., Saito,R., Oda,H., Endo,T.,
            Kondo,S., Bono,H., Okazaki,Y. and Hayashizaki,Y.
  TITLE     Protein-protein interaction panel using mouse full-length cDNAs
  JOURNAL   Genome Res 11 (10), 1758-1765 (2001)
   PUBMED   11591653
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK013355.1 and BC027511.1.
            
            On Aug 26, 2005 this sequence version replaced NM_025349.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC027511.1, CK794459.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-376               AK013355.1         2-377
            377-487             BC027511.1         367-477
FEATURES             Location/Qualifiers
     source          1..487
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="10"
                     /map="10 39.72 cM"
     gene            1..487
                     /gene="Lsm7"
                     /gene_synonym="0910001B06Rik; 1110033F18Rik"
                     /note="LSM7 homolog, U6 small nuclear RNA and mRNA
                     degradation associated"
                     /db_xref="GeneID:66094"
                     /db_xref="MGI:MGI:1913344"
     exon            1..29
                     /gene="Lsm7"
                     /gene_synonym="0910001B06Rik; 1110033F18Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             24..335
                     /gene="Lsm7"
                     /gene_synonym="0910001B06Rik; 1110033F18Rik"
                     /note="isoform 4 is encoded by transcript variant 4; U6
                     snRNA-associated Sm-like protein LSm7; LSM7 homolog, U6
                     small nuclear RNA associated"
                     /codon_start=1
                     /product="U6 snRNA-associated Sm-like protein LSm7 isoform
                     4"
                     /protein_id="NP_079625.1"
                     /db_xref="CCDS:CCDS35987.1"
                     /db_xref="GeneID:66094"
                     /db_xref="MGI:MGI:1913344"
                     /translation="MADKEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLL
                     NLVLDGTMEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFVQQQD
                     T"
     exon            30..120
                     /gene="Lsm7"
                     /gene_synonym="0910001B06Rik; 1110033F18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            121..192
                     /gene="Lsm7"
                     /gene_synonym="0910001B06Rik; 1110033F18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            193..468
                     /gene="Lsm7"
                     /gene_synonym="0910001B06Rik; 1110033F18Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcagagcgac gtgaggcgac aagatggcgg acaaagagaa aaagaagaaa gaaagcatct
       61 tggacctctc caagtacatc gataagacca ttcgggtgaa gttccagggt ggccgggaag
      121 ccagcggtat cctgaagggc tttgacccac tgctcaacct ggtgctggat gggaccatgg
      181 agtacatgag agaccctgat gaccagtaca agctgacgga ggacactcgg cagctggggc
      241 ttgtcgtatg tcgtggcacc tcggtggtgc tcatctgccc acaggacggc atggaggcca
      301 tccccaaccc cttcgtgcag cagcaggaca cttagcagca aaggagagcg gtccagcccc
      361 agggatcttc cttctatggg gtgaacttct gtgtgatgtt ttggtctttt gttcttgttt
      421 tgttttgttt tgttttttaa taaaattgcc catgtgagca tctccctcaa aaaaaaaaaa
      481 aaaaaaa
//
