LOCUS       NM_025520                516 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Mus musculus LSM5 homolog, U6 small nuclear RNA and mRNA
            degradation associated (Lsm5), mRNA.
ACCESSION   NM_025520
VERSION     NM_025520.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 516)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 516)
  AUTHORS   Olthof,A.M., White,A.K., Mieruszynski,S., Doggett,K., Lee,M.F.,
            Chakroun,A., Abdel Aleem,A.K., Rousseau,J., Magnani,C.,
            Roifman,C.M., Campeau,P.M., Heath,J.K. and Kanadia,R.N.
  TITLE     Disruption of exon-bridging interactions between the minor and
            major spliceosomes results in alternative splicing around minor
            introns
  JOURNAL   Nucleic Acids Res 49 (6), 3524-3545 (2021)
   PUBMED   33660780
REFERENCE   3  (bases 1 to 516)
  AUTHORS   Perez-Santangelo,S., Mancini,E., Francey,L.J., Schlaen,R.G.,
            Chernomoretz,A., Hogenesch,J.B. and Yanovsky,M.J.
  TITLE     Role for LSM genes in the regulation of circadian rhythms
  JOURNAL   Proc Natl Acad Sci U S A 111 (42), 15166-15171 (2014)
   PUBMED   25288739
REFERENCE   4  (bases 1 to 516)
  AUTHORS   Archambaud,C., Nahori,M.A., Soubigou,G., Becavin,C., Laval,L.,
            Lechat,P., Smokvina,T., Langella,P., Lecuit,M. and Cossart,P.
  TITLE     Impact of lactobacilli on orally acquired listeriosis
  JOURNAL   Proc Natl Acad Sci U S A 109 (41), 16684-16689 (2012)
   PUBMED   23012479
REFERENCE   5  (bases 1 to 516)
  AUTHORS   Suzuki,H., Fukunishi,Y., Kagawa,I., Saito,R., Oda,H., Endo,T.,
            Kondo,S., Bono,H., Okazaki,Y. and Hayashizaki,Y.
  TITLE     Protein-protein interaction panel using mouse full-length cDNAs
  JOURNAL   Genome Res 11 (10), 1758-1765 (2001)
   PUBMED   11591653
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC132626.1, CB204385.1 and BC061085.1.
            
            On Nov 16, 2007 this sequence version replaced NM_025520.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CB204385.1, CK792185.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-7                 BC132626.1         1-7
            8-493               CB204385.1         1-486
            494-516             BC061085.1         479-501
FEATURES             Location/Qualifiers
     source          1..516
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="6"
                     /map="6 27.72 cM"
     gene            1..516
                     /gene="Lsm5"
                     /gene_synonym="2010208O10Rik; 2310034K10Rik"
                     /note="LSM5 homolog, U6 small nuclear RNA and mRNA
                     degradation associated"
                     /db_xref="GeneID:66373"
                     /db_xref="MGI:MGI:1913623"
     exon            1..77
                     /gene="Lsm5"
                     /gene_synonym="2010208O10Rik; 2310034K10Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             32..307
                     /gene="Lsm5"
                     /gene_synonym="2010208O10Rik; 2310034K10Rik"
                     /note="LSM5 homolog, U6 small nuclear RNA associated"
                     /codon_start=1
                     /product="U6 snRNA-associated Sm-like protein LSm5"
                     /protein_id="NP_079796.1"
                     /db_xref="CCDS:CCDS51788.1"
                     /db_xref="GeneID:66373"
                     /db_xref="MGI:MGI:1913623"
                     /translation="MAANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFD
                     DFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGGEGPEV"
     exon            78..173
                     /gene="Lsm5"
                     /gene_synonym="2010208O10Rik; 2310034K10Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            174..201
                     /gene="Lsm5"
                     /gene_synonym="2010208O10Rik; 2310034K10Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            202..274
                     /gene="Lsm5"
                     /gene_synonym="2010208O10Rik; 2310034K10Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            275..501
                     /gene="Lsm5"
                     /gene_synonym="2010208O10Rik; 2310034K10Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      481..486
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Lsm5"
                     /gene_synonym="2010208O10Rik; 2310034K10Rik"
     polyA_site      501
                     /gene="Lsm5"
                     /gene_synonym="2010208O10Rik; 2310034K10Rik"
ORIGIN      
        1 gccggtgtcc ttagccactt ccggcgtggc catggcggct aacgcgacca cgaacccgtc
       61 ccaactcctg ccactagagc ttgtggacaa atgtataggg tcaagaattc acattgtgat
      121 gaagagtgat aaagaaattg tcgggacact tctaggattt gatgactttg tcaatatggt
      181 gttggaagat gtcacagaat ttgaaattac accagaagga agaagaatta caaaattaga
      241 tcaaattcta ctaaatggaa ataatataac aatgctggtt cccggaggag aagggcctga
      301 agtatgaatg gatttcctcg acgttgtttt caaaccttta acatttagag tctataaatg
      361 aagtttccgt taaagggaaa ctctttgaag atatacatcc atttttctaa gctaatcatg
      421 gttattttgg gaaaagaaga gttttgtttt gtcttctttt tttttttaaa gactaaaaaa
      481 aataaagatg tttttggtta aaaaaaaaaa aaaaaa
//
