LOCUS       NM_026309                631 bp    mRNA    linear   ROD 05-JUN-2024
DEFINITION  Mus musculus LSM3 homolog, U6 small nuclear RNA and mRNA
            degradation associated (Lsm3), mRNA.
ACCESSION   NM_026309
VERSION     NM_026309.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 631)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 631)
  AUTHORS   Jiang,M., Zhang,S., Yang,Z., Lin,H., Zhu,J., Liu,L., Wang,W.,
            Liu,S., Liu,W., Ma,Y., Zhang,L. and Cao,X.
  TITLE     Self-Recognition of an Inducible Host lncRNA by RIG-I Feedback
            Restricts Innate Immune Response
  JOURNAL   Cell 173 (4), 906-919 (2018)
   PUBMED   29706547
REFERENCE   3  (bases 1 to 631)
  AUTHORS   Sansom,S.N., Griffiths,D.S., Faedo,A., Kleinjan,D.J., Ruan,Y.,
            Smith,J., van Heyningen,V., Rubenstein,J.L. and Livesey,F.J.
  TITLE     The level of the transcription factor Pax6 is essential for
            controlling the balance between neural stem cell self-renewal and
            neurogenesis
  JOURNAL   PLoS Genet 5 (6), e1000511 (2009)
   PUBMED   19521500
REFERENCE   4  (bases 1 to 631)
  AUTHORS   McKee,A.E., Minet,E., Stern,C., Riahi,S., Stiles,C.D. and
            Silver,P.A.
  TITLE     A genome-wide in situ hybridization map of RNA-binding proteins
            reveals anatomically restricted expression in the developing mouse
            brain
  JOURNAL   BMC Dev Biol 5, 14 (2005)
   PUBMED   16033648
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 631)
  AUTHORS   Taniwaki,T., Haruna,K., Nakamura,H., Sekimoto,T., Oike,Y.,
            Imaizumi,T., Saito,F., Muta,M., Soejima,Y., Utoh,A., Nakagata,N.,
            Araki,M., Yamamura,K. and Araki,K.
  TITLE     Characterization of an exchangeable gene trap using pU-17 carrying
            a stop codon-beta geo cassette
  JOURNAL   Dev Growth Differ 47 (3), 163-172 (2005)
   PUBMED   15840001
REFERENCE   6  (bases 1 to 631)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   7  (bases 1 to 631)
  AUTHORS   Araki,K., Imaizumi,T., Sekimoto,T., Yoshinobu,K., Yoshimuta,J.,
            Akizuki,M., Miura,K., Araki,M. and Yamamura,K.
  TITLE     Exchangeable gene trap using the Cre/mutated lox system
  JOURNAL   Cell Mol Biol (Noisy-le-grand) 45 (5), 737-750 (1999)
   PUBMED   10512203
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AK003125.1.
            
            On Apr 5, 2007 this sequence version replaced NM_026309.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK003125.1, BY703481.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-631               AK003125.1         4-634
FEATURES             Location/Qualifiers
     source          1..631
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="6"
                     /map="6 40.58 cM"
     gene            1..631
                     /gene="Lsm3"
                     /gene_synonym="1010001J12Rik; 2610005D18Rik;
                     6030401D18Rik; SMX4; USS2"
                     /note="LSM3 homolog, U6 small nuclear RNA and mRNA
                     degradation associated"
                     /db_xref="GeneID:67678"
                     /db_xref="MGI:MGI:1914928"
     exon            1..44
                     /gene="Lsm3"
                     /gene_synonym="1010001J12Rik; 2610005D18Rik;
                     6030401D18Rik; SMX4; USS2"
                     /inference="alignment:Splign:2.1.0"
     CDS             24..332
                     /gene="Lsm3"
                     /gene_synonym="1010001J12Rik; 2610005D18Rik;
                     6030401D18Rik; SMX4; USS2"
                     /note="LSM3 homolog, U6 small nuclear RNA associated"
                     /codon_start=1
                     /product="U6 snRNA-associated Sm-like protein LSm3"
                     /protein_id="NP_080585.1"
                     /db_xref="CCDS:CCDS20369.1"
                     /db_xref="GeneID:67678"
                     /db_xref="MGI:MGI:1914928"
                     /translation="MADDVDQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLH
                     AYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG
                     "
     exon            45..155
                     /gene="Lsm3"
                     /gene_synonym="1010001J12Rik; 2610005D18Rik;
                     6030401D18Rik; SMX4; USS2"
                     /inference="alignment:Splign:2.1.0"
     exon            156..251
                     /gene="Lsm3"
                     /gene_synonym="1010001J12Rik; 2610005D18Rik;
                     6030401D18Rik; SMX4; USS2"
                     /inference="alignment:Splign:2.1.0"
     exon            252..631
                     /gene="Lsm3"
                     /gene_synonym="1010001J12Rik; 2610005D18Rik;
                     6030401D18Rik; SMX4; USS2"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      631
                     /gene="Lsm3"
                     /gene_synonym="1010001J12Rik; 2610005D18Rik;
                     6030401D18Rik; SMX4; USS2"
                     /note="putative"
ORIGIN      
        1 ggaaagggcg cagcgtttga aacatggcgg acgacgtaga tcagcaacag accaccaata
       61 ccgtagagga gcccctggat ctgatcaggc tcagcctgga tgagcgaatt tatgtgaaaa
      121 tgagaaatga ccgagagctt cgaggcagac tacacgctta tgatcaacat ttaaatatga
      181 tcctgggaga tgtagaagaa actgtgacaa cgatagagat tgatgaggag acatatgaag
      241 agatatataa atccacaaaa cgaaacatcc ctatgctctt cgtccgggga gatggcgtcg
      301 ttctagtcgc ccctccattg agagttggct gagacaaaag atggatcctg tgtaggaaag
      361 tggagacttt gcctcttgag atgtacagga cactcccaga gagagacgct cacacgaatc
      421 ctgatagtca gaaatgaccc caggatcact ctaccctcga agaagttcat ttgcaagcaa
      481 ctcacaagct ctccagctaa atgacctgtc cctttctcca gccctccagt cagtgtgacc
      541 gtcttgctct tttcaggagt tggtttgccc attgttcttg cagttacttt caggttgttt
      601 ttctttaaat taaatttgat gtttcctttt t
//
