LOCUS       NM_172947               1224 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus LSM12 homolog (Lsm12), mRNA.
ACCESSION   NM_172947
VERSION     NM_172947.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1224)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1224)
  AUTHORS   Bulfone,A., Carotenuto,P., Faedo,A., Aglio,V., Garzia,L.,
            Bello,A.M., Basile,A., Andre,A., Cocchia,M., Guardiola,O.,
            Ballabio,A., Rubenstein,J.L. and Zollo,M.
  TITLE     Telencephalic embryonic subtractive sequences: a unique collection
            of neurodevelopmental genes
  JOURNAL   J Neurosci 25 (33), 7586-7600 (2005)
   PUBMED   16107646
REFERENCE   3  (bases 1 to 1224)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AL954730.15
            and BX323852.5.
            
            On May 2, 2007 this sequence version replaced NM_172947.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK075668.1, AK151118.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164140 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-174               AL954730.15        18649-18822         c
            175-308             AL954730.15        16424-16557         c
            309-418             BX323852.5         17075-17184         c
            419-545             BX323852.5         15348-15474         c
            546-1224            BX323852.5         13477-14155         c
FEATURES             Location/Qualifiers
     source          1..1224
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 65.6 cM"
     gene            1..1224
                     /gene="Lsm12"
                     /gene_synonym="1110032E16Rik; 1110059P07; 2600001B17Rik"
                     /note="LSM12 homolog"
                     /db_xref="GeneID:268490"
                     /db_xref="MGI:MGI:1919592"
     exon            1..174
                     /gene="Lsm12"
                     /gene_synonym="1110032E16Rik; 1110059P07; 2600001B17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            175..308
                     /gene="Lsm12"
                     /gene_synonym="1110032E16Rik; 1110059P07; 2600001B17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            309..418
                     /gene="Lsm12"
                     /gene_synonym="1110032E16Rik; 1110059P07; 2600001B17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            419..545
                     /gene="Lsm12"
                     /gene_synonym="1110032E16Rik; 1110059P07; 2600001B17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            546..1224
                     /gene="Lsm12"
                     /gene_synonym="1110032E16Rik; 1110059P07; 2600001B17Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      788..793
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Lsm12"
                     /gene_synonym="1110032E16Rik; 1110059P07; 2600001B17Rik"
                     /note="hexamer: AACAAA"
     regulatory      799..804
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Lsm12"
                     /gene_synonym="1110032E16Rik; 1110059P07; 2600001B17Rik"
                     /note="hexamer: AACAAA"
     polyA_site      808
                     /gene="Lsm12"
                     /gene_synonym="1110032E16Rik; 1110059P07; 2600001B17Rik"
                     /note="major polyA site"
     polyA_site      829
                     /gene="Lsm12"
                     /gene_synonym="1110032E16Rik; 1110059P07; 2600001B17Rik"
     regulatory      1048..1053
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Lsm12"
                     /gene_synonym="1110032E16Rik; 1110059P07; 2600001B17Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1066
                     /gene="Lsm12"
                     /gene_synonym="1110032E16Rik; 1110059P07; 2600001B17Rik"
ORIGIN      
        1 tttcgcccgc tgctgccgcc gccgccgccg gccgcggctg ctctcccaag atggcggcac
       61 ctccgggcga gtacttcagc gttgggagcc aggtgtcgtg ccggacgtgc caggagcagc
      121 ggctgcaggg cgaggtggta gccttcgact accagtccaa aatgctggct ctaaaatgtc
      181 cctcttccag tggaaaaccc aaccatgcag acatcttgct tataaactta cagtatgttt
      241 cagaagtgga aataattaat gatcgaacag aaacccctcc tcccctagct tcactcaatg
      301 ttagtaagct tgccagcaaa gcacggacgg agaaggagga gaagctgagc caggcctatg
      361 caatcagcgc tggtgtctcc ctggagggcc aacagctctt ccagaccatt cacaagacca
      421 ttaaagactg taaatggcaa gaaaaaaaca ttgtagtcat ggaagaagtt gttattacac
      481 ccccatatca agtggaaaat tgtaaaggca aagaggggag tgcactgagc catgtacgca
      541 aaatagttga aaaacatttt agagacgtgg aaagccaaaa gatactgcag cgttcacaag
      601 cccaacaacc acagaaggag gctgctctgt catcctgagt ccacaaacag ggaggactct
      661 tccagcatcc agccacagcg atggtggtgg tggcttcagt ggaggccggc cgggggaggg
      721 aagggatcct atatttcctg ctgactctta ttagggtcag tgtttcaaaa aaaaaaacct
      781 agacttgaac aaacacccaa caaaaaaaga gcaagagaat aatttaaaag ttgaatcatt
      841 acttgactaa cagacttcgg cccaccatgc ccttctcagt cctctgaaca gtcatcttgt
      901 tagttttatt tttgcaaatt ccttttcact ctgccctcct ccacctgtga ctttccttcc
      961 ctagtctgtg tctgccatcc tgattttata agtggatata cttgccttct gaatgattga
     1021 aagaaacttt tacatctttt cttccaaaat aaaagtaaca agctgactgt gattctgatg
     1081 ttgagaccag agcagaagaa agaggtctca ctttgaattt ttcatttttt ttcttttttt
     1141 tttctttctt tttttttgca cagggcatgg cttgaattag ttttattttt cttaacttta
     1201 aatatatata tggaaatata tatt
//
