LOCUS       NM_138721                927 bp    mRNA    linear   ROD 26-SEP-2023
DEFINITION  Mus musculus U7 snRNP-specific Sm-like protein LSM10 (Lsm10),
            transcript variant 1, mRNA.
ACCESSION   NM_138721
VERSION     NM_138721.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 927)
  AUTHORS   Ingham NJ, Pearson SA, Vancollie VE, Rook V, Lewis MA, Chen J,
            Buniello A, Martelletti E, Preite L, Lam CC, Weiss FD, Powis Z,
            Suwannarat P, Lelliott CJ, Dawson SJ, White JK and Steel KP.
  TITLE     Mouse screen reveals multiple new genes underlying mouse and human
            hearing loss
  JOURNAL   PLoS Biol 17 (4), e3000194 (2019)
   PUBMED   30973865
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 927)
  AUTHORS   Yang XC, Torres MP, Marzluff WF and Dominski Z.
  TITLE     Three proteins of the U7-specific Sm ring function as the molecular
            ruler to determine the site of 3'-end processing in mammalian
            histone pre-mRNA
  JOURNAL   Mol Cell Biol 29 (15), 4045-4056 (2009)
   PUBMED   19470752
REFERENCE   3  (bases 1 to 927)
  AUTHORS   Pillai RS, Will CL, Luhrmann R, Schumperli D and Muller B.
  TITLE     Purified U7 snRNPs lack the Sm proteins D1 and D2 but contain
            Lsm10, a new 14 kDa Sm D1-like protein
  JOURNAL   EMBO J 20 (19), 5470-5479 (2001)
   PUBMED   11574479
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL627101.25, AK143443.1 and BE944742.1.
            
            [WARNING] On Dec 6, 2023 this sequence was replaced by NM_138721.3.
            
            On Jul 14, 2009 this sequence version replaced NM_138721.1.
            
            Transcript Variant: This variant (1) represents the longer
            transcript. Variants 1 and 2 encode the same protein.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC026476.1, AK143443.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-62                AL627101.25        128983-129044
            63-910              AK143443.1         2-849
            911-927             BE944742.1         1-17                c
FEATURES             Location/Qualifiers
     source          1..927
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 59.88 cM"
     gene            1..927
                     /gene="Lsm10"
                     /note="U7 snRNP-specific Sm-like protein LSM10"
                     /db_xref="GeneID:116748"
                     /db_xref="MGI:MGI:2151045"
     exon            1..157
                     /gene="Lsm10"
                     /inference="alignment:Splign:2.1.0"
     exon            158..913
                     /gene="Lsm10"
                     /inference="alignment:Splign:2.1.0"
     CDS             182..550
                     /gene="Lsm10"
                     /codon_start=1
                     /product="U7 snRNA-associated Sm-like protein LSm10"
                     /protein_id="NP_620046.1"
                     /db_xref="CCDS:CCDS18642.1"
                     /db_xref="GeneID:116748"
                     /db_xref="MGI:MGI:2151045"
                     /translation="MALSHSVKERTISENSLIILLQGLQGQITTVDLRDESVARGRID
                     NVDAFMNIRLANVTYTDRWGHQVELDDLFVTGRNVRYVHIPDGVDITATIEQQLQIIH
                     RVRNFGGKGQGRREFPSKRP"
ORIGIN      
        1 tagacacggg cgggttttgg aggcgtagcg cgcggaaggc ggaaggcatc acgcggtggg
       61 tagggcagtc gagagtgggg actagggcgc gctgggaccc gtcctcttcc cctggcgcac
      121 tggctgcgga cttttcttcc caaacccctt acgcgcgtga gcagccagcc aatgtggaac
      181 aatggcactg agccactcgg tgaaggagcg aactatttct gagaacagcc tgatcatcct
      241 gttgcagggc ctccaaggcc aaataaccac tgtggacctt cgggatgaga gtgtggcccg
      301 aggacgcatt gacaacgtgg atgctttcat gaatatccgc ctggccaatg tcacctatac
      361 cgaccgctgg ggacatcagg ttgagttgga tgaccttttt gtgaccggtc gtaacgtccg
      421 atacgtccat atcccagatg gtgtggacat cactgctact attgagcagc agctgcagat
      481 catccaccgt gtgcgcaact ttggtggcaa gggtcaaggt cgtcgagagt tcccctccaa
      541 aaggccatga gactgtgtcc tcgttaaagt tccagcacca cctcagggac ctccggtgtt
      601 ctgagccaac tcccggccat ccttccccac cagtaacaga catgtcacag cggcctttcg
      661 tagggttcca gttttcagac acaccctggg acccagaatt ccttctgctg gtggccttgg
      721 ggtaggtgac aatccctctt ttggatcatt tgtatctcaa atctccattc actgattgga
      781 ccccgtccat caaggagtcg tcaactctgg ctgtgaggag tactgcgagt gtttggagtg
      841 aatcacctct aacgtcccgt ttctttttgg catttgtttc tttttctcat aaaaccaaac
      901 ttggatacac acaaaaaaaa aaaaaaa
//
