LOCUS       NM_001417028            2294 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus large 60S subunit nuclear export GTPase 1 (Lsg1),
            transcript variant 2, mRNA.
ACCESSION   NM_001417028 XM_036159895
VERSION     NM_001417028.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2294)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2294)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   3  (bases 1 to 2294)
  AUTHORS   Brady,K.P., Rowe,L.B., Her,H., Stevens,T.J., Eppig,J.,
            Sussman,D.J., Sikela,J. and Beier,D.R.
  TITLE     Genetic mapping of 262 loci derived from expressed sequences in a
            murine interspecific cross using single-strand conformational
            polymorphism analysis
  JOURNAL   Genome Res 7 (11), 1085-1093 (1997)
   PUBMED   9371744
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC104885.8.
            
            On Feb 23, 2023 this sequence version replaced XM_036159895.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR13422598.864579.1,
                                           SRR17253011.10094481.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164134
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-126               AC104885.8         134162-134287       c
            127-253             AC104885.8         132278-132404       c
            254-374             AC104885.8         129255-129375       c
            375-479             AC104885.8         128780-128884       c
            480-566             AC104885.8         127683-127769       c
            567-627             AC104885.8         121270-121330       c
            628-804             AC104885.8         119917-120093       c
            805-1176            AC104885.8         117889-118260       c
            1177-1278           AC104885.8         116053-116154       c
            1279-1422           AC104885.8         115829-115972       c
            1423-1546           AC104885.8         114435-114558       c
            1547-1626           AC104885.8         112154-112233       c
            1627-1800           AC104885.8         111370-111543       c
            1801-2294           AC104885.8         108093-108586       c
FEATURES             Location/Qualifiers
     source          1..2294
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="16"
                     /map="16 21.34 cM"
     gene            1..2294
                     /gene="Lsg1"
                     /gene_synonym="5830465I20; D16Bwg1547e"
                     /note="large 60S subunit nuclear export GTPase 1"
                     /db_xref="GeneID:224092"
                     /db_xref="MGI:MGI:107236"
     exon            1..126
                     /gene="Lsg1"
                     /gene_synonym="5830465I20; D16Bwg1547e"
                     /inference="alignment:Splign:2.1.0"
     exon            127..253
                     /gene="Lsg1"
                     /gene_synonym="5830465I20; D16Bwg1547e"
                     /inference="alignment:Splign:2.1.0"
     exon            254..374
                     /gene="Lsg1"
                     /gene_synonym="5830465I20; D16Bwg1547e"
                     /inference="alignment:Splign:2.1.0"
     exon            375..479
                     /gene="Lsg1"
                     /gene_synonym="5830465I20; D16Bwg1547e"
                     /inference="alignment:Splign:2.1.0"
     exon            480..566
                     /gene="Lsg1"
                     /gene_synonym="5830465I20; D16Bwg1547e"
                     /inference="alignment:Splign:2.1.0"
     exon            567..627
                     /gene="Lsg1"
                     /gene_synonym="5830465I20; D16Bwg1547e"
                     /inference="alignment:Splign:2.1.0"
     exon            628..804
                     /gene="Lsg1"
                     /gene_synonym="5830465I20; D16Bwg1547e"
                     /inference="alignment:Splign:2.1.0"
     exon            805..1176
                     /gene="Lsg1"
                     /gene_synonym="5830465I20; D16Bwg1547e"
                     /inference="alignment:Splign:2.1.0"
     exon            1177..1278
                     /gene="Lsg1"
                     /gene_synonym="5830465I20; D16Bwg1547e"
                     /inference="alignment:Splign:2.1.0"
     exon            1279..1422
                     /gene="Lsg1"
                     /gene_synonym="5830465I20; D16Bwg1547e"
                     /inference="alignment:Splign:2.1.0"
     exon            1423..1546
                     /gene="Lsg1"
                     /gene_synonym="5830465I20; D16Bwg1547e"
                     /inference="alignment:Splign:2.1.0"
     exon            1547..1626
                     /gene="Lsg1"
                     /gene_synonym="5830465I20; D16Bwg1547e"
                     /inference="alignment:Splign:2.1.0"
     exon            1627..1800
                     /gene="Lsg1"
                     /gene_synonym="5830465I20; D16Bwg1547e"
                     /inference="alignment:Splign:2.1.0"
     exon            1801..2294
                     /gene="Lsg1"
                     /gene_synonym="5830465I20; D16Bwg1547e"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2274..2279
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Lsg1"
                     /gene_synonym="5830465I20; D16Bwg1547e"
                     /note="hexamer: ATTAAA"
     polyA_site      2294
                     /gene="Lsg1"
                     /gene_synonym="5830465I20; D16Bwg1547e"
                     /note="major polyA site"
ORIGIN      
        1 agtggtttgt gctgttgatg cgtggttatg ggtcggagac gagcgccggg tggtgggtcc
       61 ctgggccgag tacttatccg gcagcagact cagcgaagcc gcagccaccg tcatactgac
      121 tcctggctgc atacaagtga actcaatgat ggctatgact ggggtcgtct gaatcttcag
      181 tctgtgacag agcagagctc cctggaggac tttcttgcaa ctgcagaact tgcagggacc
      241 gagtttgtgg ctgagaagct gaatattaag tttgtacccc ctgaggctag aaccggactg
      301 ctgtcttttg aggagagcca gagaattaag aaactccacg aagaaaacag acagttcttg
      361 tgtataccaa ggagtttcta tgattgtttc aggccaaatt gggacagaaa aactagccca
      421 gaagaactga aacaagcaga gaaagataac ttcctgaaat ggaggcgcca gcttgtgcgg
      481 ctagaagagg aacagaagtt gatattgact ccctttgaac ggaacttgga cttctggcgc
      541 cagctctgga gggtcattga gagaagtgat attgtggtcc agatcgtaga tgctcgaaac
      601 ccgctcctgt ttagatgtga ggatttggag tgttacgtga aagagatcga tgctgccaag
      661 gagaacgtga tcctgataaa caaggcagac ttgctgactg ctgagcagcg gtttgcctgg
      721 gctgtgcact ttgaaaagga aggggtaaag gttatcttct ggtcagcttt ggcagaaact
      781 gatcacctaa atggtgactt gaaggaggaa gtagacagtg ttgctggaga caccaacaaa
      841 acagagtctg aaagctccag tttggatgcg aatgaaatcc cacacagaga cttgatctcg
      901 cttagtgagg agtccgcaag tgacagtggt gacagcaaat atgaggactg tcaggaggac
      961 gaagaggaag attggcagac gtgttcagaa gaagacagcg tccctgagga ggaggagggc
     1021 tgtaatgcgg attctgagac tcagaacaga aaaaacgcag aaaatcaaca agtgaacaat
     1081 gatagctacc tggtgtcgaa acaggaatta ctggaactct ttaagaaact ccacactgga
     1141 aagaaagtga aagatggaca gctaactgtt gggctggtgg gctaccctaa tgttggtaag
     1201 agctcaacca tcaacaccat catgggcaac aagaaagtat cggtgtctgc cacgccaggc
     1261 cacaccaagc atttccagac cctgtacgtg gagcctggcc tctgcctgtg tgactgcccg
     1321 ggcctggtga tgccatcttt cgtgtccacc aaagcagaga tgatttgcaa tgggatcctc
     1381 cctatcgacc agatgagaga ccacgttcca cccgtatcac tagtttgcca gaatatccca
     1441 cggcgagttt tggaagtgac atatggtatt aacattataa agcctagaga agatgaagac
     1501 ccctaccgac ctccaacctc agaagaactg ttgacggctt atggatgcat gagaggattc
     1561 atgacagcac atgggcagcc agaccagcct cgatctgcac ggtacatcct aaaggactat
     1621 gttggaggta aactactgta ttgccaccct cctcctggaa aagaccctgt ggcgttccag
     1681 caccaacacc agcagctcct agagagcaaa gtaaaaggtg gagaactgag acttcagccg
     1741 ggcaaaggcc gaaaagccaa acagatcgaa aatgtagtcg acaaaacttt tttccatcag
     1801 gagaacgtca gagcactgac caaaggtgtc caggctgtca tgggttacaa gcccgggcat
     1861 ggcctggtga ctgcggctgc tgcgagcgct gagaatgtac ctgggaagcc ctggaaaaaa
     1921 cacggtaaca gaaacaaaaa agagaaaagc cgtaggctct acaagcacct ggatgtgtga
     1981 gctcggctga acagagacgg caggcagctg cgctgtgcgg gaggacacga gctcaaaccg
     2041 ccactgctgc tgtcgctgcc gtgctgctct cctgaccact gcactgtgga ctggaccctg
     2101 ctctcctgga gagcacagtc gcaccagaag tcttgacatc aagacagcct ttcggaagca
     2161 cctgctgtgg ccgtggtagt catggggtgc cccagaagtc tcatcctgca gaaggatggt
     2221 ggatatgtgt acaagcatac aaatgcacat tgactttgag gttttgggaa gttattaaaa
     2281 ttaattttcc acta
//
