LOCUS       NM_001013019            2600 bp    mRNA    linear   ROD 05-JUN-2024
DEFINITION  Mus musculus LRRN4 C-terminal like (Lrrn4cl), transcript variant 1,
            mRNA.
ACCESSION   NM_001013019 XM_484769
VERSION     NM_001013019.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2600)
  AUTHORS   van der Weyden,L., Harle,V., Turner,G., Offord,V., Iyer,V.,
            Droop,A., Swiatkowska,A., Rabbie,R., Campbell,A.D., Sansom,O.J.,
            Pardo,M., Choudhary,J.S., Ferreira,I., Tullett,M., Arends,M.J.,
            Speak,A.O. and Adams,D.J.
  TITLE     CRISPR activation screen in mice identifies novel membrane proteins
            enhancing pulmonary metastatic colonisation
  JOURNAL   Commun Biol 4 (1), 395 (2021)
   PUBMED   33758365
  REMARK    GeneRIF: CRISPR activation screen in mice identifies novel membrane
            proteins enhancing pulmonary metastatic colonisation.
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2600)
  AUTHORS   Shalom-Barak,T., Zhang,X., Chu,T., Timothy Schaiff,W., Reddy,J.K.,
            Xu,J., Sadovsky,Y. and Barak,Y.
  TITLE     Placental PPARgamma regulates spatiotemporally diverse genes and a
            unique metabolic network
  JOURNAL   Dev Biol 372 (1), 143-155 (2012)
   PUBMED   22967998
REFERENCE   3  (bases 1 to 2600)
  AUTHORS   Tang,T., Li,L., Tang,J., Li,Y., Lin,W.Y., Martin,F., Grant,D.,
            Solloway,M., Parker,L., Ye,W., Forrest,W., Ghilardi,N., Oravecz,T.,
            Platt,K.A., Rice,D.S., Hansen,G.M., Abuin,A., Eberhart,D.E.,
            Godowski,P., Holt,K.H., Peterson,A., Zambrowicz,B.P. and de
            Sauvage,F.J.
  TITLE     A mouse knockout library for secreted and transmembrane proteins
  JOURNAL   Nat Biotechnol 28 (7), 749-755 (2010)
   PUBMED   20562862
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC129217.3 and AK087615.1.
            
            On Feb 8, 2018 this sequence version replaced NM_001013019.2.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC107245.2, SRR9219382.47609.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-17                AC129217.3         83567-83583
            18-715              AK087615.1         2-699
            716-2600            AC129217.3         84824-86708
FEATURES             Location/Qualifiers
     source          1..2600
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="19"
                     /map="19 5.81 cM"
     gene            1..2600
                     /gene="Lrrn4cl"
                     /gene_synonym="1110067I12Rik"
                     /note="LRRN4 C-terminal like"
                     /db_xref="GeneID:68852"
                     /db_xref="MGI:MGI:1916102"
     exon            1..345
                     /gene="Lrrn4cl"
                     /gene_synonym="1110067I12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            346..2600
                     /gene="Lrrn4cl"
                     /gene_synonym="1110067I12Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             351..1070
                     /gene="Lrrn4cl"
                     /gene_synonym="1110067I12Rik"
                     /note="LRRN4 C-terminal-like protein"
                     /codon_start=1
                     /product="LRRN4 C-terminal-like protein precursor"
                     /protein_id="NP_001013037.1"
                     /db_xref="CCDS:CCDS37909.1"
                     /db_xref="GeneID:68852"
                     /db_xref="MGI:MGI:1916102"
                     /translation="MLGSLSLLWLAAMTTSLVSQPQILTLEDYQEGEEDDVTVATPSL
                     AVRCDYDRCRHLQVSCQELQKVGPVACLCPGLSREDQQPEPPRLGEVQIMAEEGYAVV
                     HWCAPFSPVSHYWLLLWESNGAPQKSAPLNATVRRAELKGLKPGVAYVLCVVAANDAG
                     ESNVPGAEVEGPENWTGPSFGPCRKFIMPPKPVTLVYAAVGVGTALALLSCAALVWHF
                     CLRERWGCPRRQGMAQASEAL"
     regulatory      2482..2487
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Lrrn4cl"
                     /gene_synonym="1110067I12Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      2502
                     /gene="Lrrn4cl"
                     /gene_synonym="1110067I12Rik"
                     /note="major polyA site"
ORIGIN      
        1 ttcctctgtc agaacccagg catcctggcc tccagctgaa accgctgcat gtggcttccc
       61 ctctccctgg ccccgtgact cagtccctct gagggaacca gccctcttct tggcacacag
      121 gggctaggtg atgacatcag agttgaggag tataaaagtt ctcaaccaaa atagaattga
      181 agatacaacc tgacagtggc ctctccgcct gatagccacg gatatctggg ggcaaaccct
      241 cactgtgacg aggcctaccc actggtgagg ggctactgtg ggtcccggga agagggtgca
      301 cagagagaag tctgaattgc ctgagcggga tttgtacaaa tgcagactcc atgttgggct
      361 ctctttccct tctgtggctg gcagccatga ccacctcctt ggtttcccaa cctcagatct
      421 tgaccctgga agactaccag gaaggggaag aggatgatgt gacagtagct acaccttcct
      481 tagctgtccg ttgcgactat gaccgttgcc gccacctgca ggtgtcctgc caggagctgc
      541 agaaggttgg gccagtagcc tgcctgtgcc cagggctctc cagggaagat caacagccag
      601 agcctcctcg cctgggagaa gtgcaaataa tggctgaaga aggctacgca gtggttcact
      661 ggtgtgctcc cttctctcca gtcagccact actggcttct gctttgggaa agcaacgggg
      721 ctccacagaa gagtgcccct ctcaatgcta cagttcgaag agcagagctg aagggactaa
      781 agcctggggt tgcttatgtc ctttgcgtgg tggctgctaa tgacgcaggt gagagcaatg
      841 ttcctggggc agaagtcgag ggtcctgaga actggactgg cccttccttt gggccctgtc
      901 gcaagtttat catgccgcct aagcctgtta ccctggtcta tgcagccgtg ggagtgggca
      961 cagccttagc tctgctgagc tgtgcagccc tggtttggca tttctgcctt cgtgagcgat
     1021 ggggttgccc ccgacgtcaa ggtatggccc aagcgtcaga agctctctga caggagtccc
     1081 ctcgactaca aacaactcat ctggagagcc caacccactc ccaggaggag tgtggggctt
     1141 gttgccacct ggcaaccaga ggcacagcca agccagagcg gaagcccagg caattagcct
     1201 cagcactgag ggcttggtta gtccctaact ggtcactatg ttccttccct gttgggggtt
     1261 agaaaaagta gcaattattc cttggaggtc tgatgaaaat gatttaagct ttatgggttt
     1321 gaaggggtaa aattacagac attatacatg aacttatata tagccagtta aaatggagct
     1381 atttaaaggc ctggcatggt ggtttacaat tttagtctcc agcaccctgg aagcagaggc
     1441 aggcggatct gagtttccaa agcagcctga tctacataga aagattccag gccaacccag
     1501 ataatatagt gagaccctgt ctcaaaaaga gtaaaacaga agcaaaacaa acaaaaggtg
     1561 gggcgggata gagagattgt tcagcagtta agaatactgg ctatttttcc agaggacaga
     1621 attttattcc tagcatccac atggcagctc acaaccatct gtaattccat ttccaggaga
     1681 tccagtgtct aattctgacc tctgccagca tcaggcacat acatacgcac acatacatac
     1741 atacatacat acatacacac acacacacac acacacacac acacagagag agacaaaaca
     1801 ctcatacaca taaaataaaa attaatttga agtgtagctg tttaaaaatg taaactgttc
     1861 atagctcata ggtctctcac agcaagcagc agactacatt tggcctgttg gctgatttgc
     1921 caacacctat cattctcaaa gggactttgt gactgtcggt ggcttccctg catattttga
     1981 gaataagctg agttttgcca acacctgtta ttctgaaaag gactctgcga ctgtgggtgg
     2041 cttccacgca tattttgaga ataagcaggg tagatgtgga gactggagct ctgtctttct
     2101 gctacttgtt gtttccttcc taaggatgat cctgctcaga ctccacctgg ggctatggaa
     2161 gctggggatt aaaaatcagc atgggctgga ggagacaggg cccaagcttc tggctacata
     2221 agttagtggt cttgtttgtt ttgggggttt ttgtttgttt gttttttcaa gacagggttt
     2281 ctctgtgtag ctctggctgt cctggaactc actttgtaga ccaggctggc ctcgaactca
     2341 gaaatccgcc tgcctctgcc tcccaagtgc tgggattaaa ggcatgcgcc accaccgccc
     2401 agcagtggtt ttatttgtaa ctaacagttt ataccaatga ctccccacaa ctttgtgtaa
     2461 ttgtttttcc actgtattaa cattaaaggg aatctaaaat cattacattt tcagtttcat
     2521 gatcttgttt aattccatat agattttttt cattatgact tagacttttg gccaagatta
     2581 aaggtatgac tatttttcaa
//
